IHF
UniProtKB: P0A6X7 regulon and binding site collection of Escherichia coli MC4100
For the selected transcription factor and species, the list of curated binding sites in the database are displayed below. Gene regulation diagrams show [binding sites], [positively-regulated genes], [negatively-regulated genes], [both positively and negatively regulated genes], [genes with unspecified type of regulation].
| Genome | TF | TF conformation | Site Sequence | Site Location | Experimental Techniques | Gene Regulation | Curation | PMID |
|---|---|---|---|---|---|---|---|---|
| NC_000913.2 | P0A6X7 | OTHER | TAAAACGTCTTAA | + [1278886, 1278898] | Beta-gal reporter assay (ECO:0005616), EMSA (ECO:0001807), DNAse footprinting (ECO:0005631) | narK (b1223), narG (b1224), narH (b1225), narJ (b1226), narI (b1227) | 474 | 8419352 |
| NC_019062.1 | P0A6X7 | DIMER | TAACAAGCCATGAAAA | + [10989, 11004] | Beta-gal reporter assay (ECO:0005616), EMSA (ECO:0001807), PSSM site search (ECO:0005659) | intI1 (D616_p58022), tnpM (D616_p58024), aadA1 (D616_p58023) | 484 | 21778209 |
| NC_000913.2 | P0A6X7 | N/A | TTAAGGGTTTTCAA | + [1397672, 1397685] | Beta-gal reporter assay (ECO:0005616), DNAse footprinting (ECO:0005631) | fnr (b1334), ogt (b1335), abgT (b1336), abgB (b1337), abgA (b1338) | 526 | 17293415 |