SmcR - UniProtKB: Q7ME71 regulon and binding site collection of Vibrio vulnificus MO6-24/O


Sites are listed as curated.

TAACTGATCTATTAATTAATAA
AATGATGTTAATGATAATTATT

Sites are listed after the alignment process. For alignment of variable-length binding sites, LASAGNA is used.

TAACTGATCTATTAATTAATAACT
CAAATGATGTTAATGATAATTATT

For the selected transcription factor and species, the list of curated binding sites in the database are displayed below. Gene regulation diagrams show binding sites, positively-regulated genes, negatively-regulated genes, both positively and negatively regulated genes, genes with unspecified type of regulation.

    Genome TF TF conformation Site sequence Site location Experimental techniques Gene regulation Curations PMIDs
    NC_014965.1 Q7ME71 not specified TAACTGATCTATTAATTAATAA +[926399:926420] Experimental technique details DNAse footprinting (ECO:0005631) - Experimental technique details EMSA (ECO:0001807) - Experimental technique details Primer Extension assay (ECO:0005657) - Experimental technique details qRT-PCR [RNA] (ECO:0001808) - Experimental technique details Visual sequence inspection (nan) VVMO6_00833 , VVMO6_00832 , VVMO6_00834 , VVMO6_00835 , VVMO6_00836 , VVMO6_00837 , VVMO6_00838 , VVMO6_00839 , VVMO6_00840 , VVMO6_00841 , VVMO6_00842 , VVMO6_00843
    ... ... VVMO6_00833 VVMO6_00832 VVMO6_00834 VVMO6_00835 VVMO6_00836 VVMO6_00837 VVMO6_00838 VVMO6_00839 VVMO6_00840 VVMO6_00841 VVMO6_00842 VVMO6_00843
    840 22679105
    NC_014966.1 Q7ME71 not specified AATGATGTTAATGATAATTATT -[1410208:1410229] Experimental technique details DNAse footprinting (ECO:0005631) - Experimental technique details EMSA (ECO:0001807) - Experimental technique details Luciferase reporter assay (ECO:0005648) - Experimental technique details qRT-PCR [RNA] (ECO:0001808) - Experimental technique details Site directed mutagenesis (ECO:0005667) VVMO6_04199 , VVMO6_04198 , VVMO6_04197 , VVMO6_04200
    ... ... VVMO6_04199 VVMO6_04198 VVMO6_04197 VVMO6_04200
    878 22696215

    All binding sites in split view are combined and a sequence logo is generated. Note that it may contain binding site sequences from different transcription factors and different species. To see individiual sequence logos and curation details go to split view.


    Sites are listed as curated.

    TAACTGATCTATTAATTAATAA
    AATGATGTTAATGATAATTATT

    Sites are listed after the alignment process. For alignment of variable-length binding sites, LASAGNA is used.

    TAACTGATCTATTAATTAATAACT
    CAAATGATGTTAATGATAATTATT
    Download data in FASTA format.
    Download data in TSV (tab-separated-value) format. For each binding site, all sources of evidence (i.e. experimental techniques and publication information) are combined into one record.
    Download raw data in TSV format. All reported sites are exported individually.
    Download data in Attribute-Relation File Format (ARFF).
    Download Position-Specific-Frequency-Matrix of the motif in TRANSFAC format.
    Download Position-Specific-Frequency-Matrix of the motif in JASPAR format.
    Download Position-Specific-Frequency-Matrix of the motif in raw FASTA format. The matrix consists of four columns in the order A C G T.