CcpA - UniProtKB: F9UQH6 regulon and binding site collection of Lactobacillus plantarum WCFS1


Sites are listed as curated.

TGTAAGGGCTATCA
TGTAAGCGTTTGCT
TGTAAGGGCTATCA

Sites are listed after the alignment process. For alignment of variable-length binding sites, LASAGNA is used.

TGTAAGGGCTATCA
TGTAAGCGTTTGCT
TGTAAGGGCTATCA

For the selected transcription factor and species, the list of curated binding sites in the database are displayed below. Gene regulation diagrams show binding sites, positively-regulated genes, negatively-regulated genes, both positively and negatively regulated genes, genes with unspecified type of regulation.

    Genome TF TF conformation Site sequence Site location Experimental techniques Gene regulation Curations PMIDs
    NC_004567.2 F9UQH6 not specified TGTAAGGGCTATCA -[3141953:3141966] Experimental technique details CAT reporter gene assays (ECO:0005617) - Experimental technique details EMSA (ECO:0001807) - Experimental technique details Site directed mutagenesis (ECO:0005667) pbg9 (lp_3525)
    ... ... pbg9
    851 11934508
    NC_004567.2 F9UQH6 not specified TGTAAGCGTTTGCT -[3208200:3208213] Experimental technique details Premethylation interference footprinting (ECO:0005656) - Experimental technique details Primer Extension assay (ECO:0005657) - Experimental technique details Visual sequence inspection (nan) pox5 (lp_3589)
    ... ... pox5
    859 15175288
    NC_004567.2 F9UQH6 not specified TGTAAGGGCTATCA -[3141953:3141966] Experimental technique details Premethylation interference footprinting (ECO:0005656) - Experimental technique details Primer Extension assay (ECO:0005657) pbg9 (lp_3525)
    ... ... pbg9
    863 11425700

    All binding sites in split view are combined and a sequence logo is generated. Note that it may contain binding site sequences from different transcription factors and different species. To see individiual sequence logos and curation details go to split view.


    Sites are listed as curated.

    TGTAAGGGCTATCA
    TGTAAGCGTTTGCT
    TGTAAGGGCTATCA

    Sites are listed after the alignment process. For alignment of variable-length binding sites, LASAGNA is used.

    TGTAAGGGCTATCA
    TGTAAGCGTTTGCT
    TGTAAGGGCTATCA
    Download data in FASTA format.
    Download data in TSV (tab-separated-value) format. For each binding site, all sources of evidence (i.e. experimental techniques and publication information) are combined into one record.
    Download raw data in TSV format. All reported sites are exported individually.
    Download data in Attribute-Relation File Format (ARFF).
    Download Position-Specific-Frequency-Matrix of the motif in TRANSFAC format.
    Download Position-Specific-Frequency-Matrix of the motif in JASPAR format.
    Download Position-Specific-Frequency-Matrix of the motif in raw FASTA format. The matrix consists of four columns in the order A C G T.