Fur - UniProtKB: Q03456 regulon and binding site collection of Pseudomonas aeruginosa PAO1


Sites are listed as curated.

TCTTCTGATAATTATTATC
CTGAATGATAATAATTATC
ACGAACGTGAATCATTCTC
GGAAATGAGAATCATTATT
GATAATGAGAATAGTTATT
GAAAACAATAATCAATCTC
GATAATGAGATTGATTATT
CAAAACGCATATCTGAATC
GATAATTATTTGCATTAGC
AAAAACGAGAATTATTCGC
ACGATTGAAAATCATTATC
ACGATTGCTAATCAATCTT
ATAATTGAGAATCGTTATT
CTGAATGAAACCCAATCTT
CTTGATGAGAATTATTATA
GAAAACAATAATCAATCTC
GAAGATGGTAATTAATTGC
GACATTGAGATTCAATAAC
GCAAACGATATTCATTATC
GCCAATGATATTGATTTGC
GGAAATGAGAATCATTATT
GTAATTGACAATCATTATC
GTTATTGAGAATCATTGGC
TAAATTTATAATAATTCTC
TCCAATGCAAATCAATATC
TTTATCGCAACTGATTATC
TTTTATGATAATGATTTTC
ACGAACGTGAATCATTCTC
CTGAATGATAATAATTATC
GATAATGAGAATAGTTATT
TCTTCTGATAATTATTATC
TGTAATAATAACTATTCTC
GATATTAATACCCATTTCA
GTAATTGACAATCATTATC
GATAATAAGAATTATTCTC
GACATTGAGATTCAATAAC
GCGAATGATAATACATATC
TGTAATAAGAATCAGTCTC
AAAAACGAGAATTATTCGC
GCAAATGCTAATCATTCGC
ACGATTGCTAATCAATCTT
GCTGATTACCATCATGATG
GCTAATGCAAATAATTATC
TCCAATGCAAATCAATATC
GATAATTATTTGCATTAGC
AAAAATGCAAATCTTTCGC
GATAATGAGATTGATTATT
GAAGATGGTAATTAATTGC
CTTGATGAGAATTATTATA
CTGAATGATAATAATTATC
CATAATGATAAGCATTATC
ACGAATGATAAGAAATCTC
AATAATGAGAATGATTGTC
GACAATGCGATTCATTATC
GATAATGGCGATCTTCATC
GCAAATGAAAACTATTATC
GGAAATGAGATTTATTATC
TAAAATGATAACTATTATC
TAAATTTATAATAATTCTC
TTTTATGATAATGATTTTC
CCAAATGGGAATGACTCTC

Sites are listed after the alignment process. For alignment of variable-length binding sites, LASAGNA is used.

TCTTCTGATAATTATTATC
CTGAATGATAATAATTATC
GAGAATGATTCACGTTCGT
AATAATGATTCTCATTTCC
GATAATGAGAATAGTTATT
GAGATTGATTATTGTTTTC
AATAATCAATCTCATTATC
GATTCAGATATGCGTTTTG
GCTAATGCAAATAATTATC
GCGAATAATTCTCGTTTTT
ACGATTGAAAATCATTATC
ACGATTGCTAATCAATCTT
ATAATTGAGAATCGTTATT
CTGAATGAAACCCAATCTT
CTTGATGAGAATTATTATA
GAGATTGATTATTGTTTTC
GCAATTAATTACCATCTTC
GTTATTGAATCTCAATGTC
GATAATGAATATCGTTTGC
GCAAATCAATATCATTGGC
AATAATGATTCTCATTTCC
GTAATTGACAATCATTATC
GTTATTGAGAATCATTGGC
GAGAATTATTATAAATTTA
TCCAATGCAAATCAATATC
TTTATCGCAACTGATTATC
TTTTATGATAATGATTTTC
GAGAATGATTCACGTTCGT
CTGAATGATAATAATTATC
GATAATGAGAATAGTTATT
TCTTCTGATAATTATTATC
GAGAATAGTTATTATTACA
GATATTAATACCCATTTCA
GTAATTGACAATCATTATC
GAGAATAATTCTTATTATC
GTTATTGAATCTCAATGTC
GCGAATGATAATACATATC
GAGACTGATTCTTATTACA
GCGAATAATTCTCGTTTTT
GCGAATGATTAGCATTTGC
ACGATTGCTAATCAATCTT
CATCATGATGGTAATCAGC
GCTAATGCAAATAATTATC
TCCAATGCAAATCAATATC
GCTAATGCAAATAATTATC
GCGAAAGATTTGCATTTTT
AATAATCAATCTCATTATC
GCAATTAATTACCATCTTC
CTTGATGAGAATTATTATA
CTGAATGATAATAATTATC
CATAATGATAAGCATTATC
ACGAATGATAAGAAATCTC
GACAATCATTCTCATTATT
GATAATGAATCGCATTGTC
GATAATGGCGATCTTCATC
GCAAATGAAAACTATTATC
GATAATAAATCTCATTTCC
TAAAATGATAACTATTATC
GAGAATTATTATAAATTTA
TTTTATGATAATGATTTTC
CCAAATGGGAATGACTCTC

For the selected transcription factor and species, the list of curated binding sites in the database are displayed below. Gene regulation diagrams show binding sites, positively-regulated genes, negatively-regulated genes, both positively and negatively regulated genes, genes with unspecified type of regulation.

    Genome TF TF conformation Site sequence Site location Experimental techniques Gene regulation Curations PMIDs
    NC_002516.2 Q03456 not specified TCTTCTGATAATTATTATC +[6225965:6225983] Experimental technique details DNAse footprinting (ECO:0005631) - Experimental technique details EMSA (ECO:0001807) - Experimental technique details Genomic SELEX (ECO:0005634) PA5532 , tonB1 (PA5531)
    ... ... PA5532 tonB1
    296 8633080
    NC_002516.2 Q03456 not specified CTGAATGATAATAATTATC -[6225971:6225989] Experimental technique details DNAse footprinting (ECO:0005631) - Experimental technique details EMSA (ECO:0001807) - Experimental technique details Genomic SELEX (ECO:0005634) PA5532 , tonB1 (PA5531)
    ... ... PA5532 tonB1
    296 8633080
    NC_002516.2 Q03456 not specified ACGAACGTGAATCATTCTC +[3038080:3038098] Experimental technique details DNAse footprinting (ECO:0005631) - Experimental technique details EMSA (ECO:0001807) - Experimental technique details Genomic SELEX (ECO:0005634) pfeS (PA2687) , PA2684 , PA2685 , pfeR (PA2686)
    ... ... pfeS PA2684 PA2685 pfeR
    296 8633080
    NC_002516.2 Q03456 dimer GGAAATGAGAATCATTATT +[5283966:5283984] Experimental technique details Consensus search (ECO:0005624) - Experimental technique details EMSA (ECO:0001807) - Experimental technique details Northern blot (ECO:0005653) prrF1 (PA4704.1) , cbpA (PA4704) , prrF2 (PA4704.2)
    ... ... prrF1 cbpA prrF2
    94 15210934
    NC_002516.2 Q03456 dimer GATAATGAGAATAGTTATT +[5284178:5284196] Experimental technique details Consensus search (ECO:0005624) - Experimental technique details EMSA (ECO:0001807) - Experimental technique details Northern blot (ECO:0005653) prrF2 (PA4704.2) , prrF1 (PA4704.1) , PA4705 , PA4706 , PA4707
    ... ... prrF2 prrF1 PA4705 PA4706 PA4707
    94 15210934
    NC_002516.2 Q03456 dimer GAAAACAATAATCAATCTC -[5000326:5000344] Experimental technique details Consensus search (ECO:0005624) - Experimental technique details DNAse footprinting (ECO:0005631) - Experimental technique details EMSA (ECO:0001807) - Experimental technique details Primer Extension assay (ECO:0005657) PA4471 , fumC1 (PA4470) , PA4469 , sodM (PA4468) , PA4467 , pmbA (PA4472) , PA4473 , PA4474 , PA4475 , PA4476 , cafA (PA4477) , PA4478
    ... ... 5000000 PA4471 fumC1 PA4469 sodM PA4467 pmbA PA4473 PA4474 PA4475 PA4476 cafA PA4478
    188 9045799
    NC_002516.2 Q03456 dimer GATAATGAGATTGATTATT +[5000320:5000338] Experimental technique details Consensus search (ECO:0005624) - Experimental technique details DNAse footprinting (ECO:0005631) - Experimental technique details EMSA (ECO:0001807) - Experimental technique details Primer Extension assay (ECO:0005657) PA4471 , fumC1 (PA4470) , PA4469 , sodM (PA4468) , PA4467 , pmbA (PA4472) , PA4473 , PA4474 , PA4475 , PA4476 , cafA (PA4477) , PA4478
    ... ... 5000000 PA4471 fumC1 PA4469 sodM PA4467 pmbA PA4473 PA4474 PA4475 PA4476 cafA PA4478
    188 9045799
    NC_002516.2 Q03456 dimer CAAAACGCATATCTGAATC +[5289099:5289117] Experimental technique details DNAse footprinting (ECO:0005631) - Experimental technique details RNAse protection (ECO:0000288) phuR (PA4710) , phuT (PA4708) , PA4709
    ... ... phuR phuT PA4709
    306 10658665
    NC_002516.2 Q03456 dimer GATAATTATTTGCATTAGC +[5289123:5289141] Experimental technique details DNAse footprinting (ECO:0005631) - Experimental technique details RNAse protection (ECO:0000288) phuR (PA4710) , phuT (PA4708) , PA4709
    ... ... phuR phuT PA4709
    306 10658665
    NC_002516.2 Q03456 not specified AAAAACGAGAATTATTCGC +[534060:534078] Experimental technique details DNAse footprinting (ECO:0005631) - Experimental technique details EMSA (ECO:0001807) - Experimental technique details Genomic SELEX (ECO:0005634) - Experimental technique details RNAse protection (ECO:0000288) PA0472 , PA0471 , fiuA (PA0470) , PA0473 , PA0474 , PA0475 , PA0476
    ... ... PA0472 PA0471 fiuA PA0473 PA0474 PA0475 PA0476
    411 8633080
    NC_002516.2 Q03456 not specified ACGATTGAAAATCATTATC -[3819149:3819167] Experimental technique details DNAse footprinting (ECO:0005631) - Experimental technique details EMSA (ECO:0001807) - Experimental technique details Genomic SELEX (ECO:0005634) - Experimental technique details RNAse protection (ECO:0000288) PA3410 , PA3409 , PA3411 , PA3412
    ... ... PA3410 PA3409 PA3411 PA3412
    411 8633080
    NC_002516.2 Q03456 not specified ACGATTGCTAATCAATCTT +[1015907:1015925] Experimental technique details DNAse footprinting (ECO:0005631) - Experimental technique details EMSA (ECO:0001807) - Experimental technique details Genomic SELEX (ECO:0005634) - Experimental technique details RNAse protection (ECO:0000288) PA0929 , gacS (PA0928) , ldhA (PA0927) , PA0926 , PA0925 , PA0924 , dinB (PA0923) , PA0922.1 , PA0930
    ... ... PA0929 gacS ldhA PA0926 PA0925 PA0924 dinB PA0922.1 PA0930
    411 8633080
    NC_002516.2 Q03456 not specified ATAATTGAGAATCGTTATT +[732882:732900] Experimental technique details DNAse footprinting (ECO:0005631) - Experimental technique details EMSA (ECO:0001807) - Experimental technique details Genomic SELEX (ECO:0005634) - Experimental technique details RNAse protection (ECO:0000288) hemO (PA0672) , PA0671 , PA0670 , PA0669 , PA0673
    ... ... hemO PA0671 PA0670 PA0669 PA0673
    411 8633080
    NC_002516.2 Q03456 not specified CTGAATGAAACCCAATCTT +[5203315:5203333] Experimental technique details DNAse footprinting (ECO:0005631) - Experimental technique details EMSA (ECO:0001807) - Experimental technique details Genomic SELEX (ECO:0005634) - Experimental technique details RNAse protection (ECO:0000288) PA4634 , PA4633 , PA4635
    ... ... PA4634 PA4633 PA4635
    411 8633080
    NC_002516.2 Q03456 not specified CTTGATGAGAATTATTATA -[2640960:2640978] Experimental technique details DNAse footprinting (ECO:0005631) - Experimental technique details EMSA (ECO:0001807) - Experimental technique details Genomic SELEX (ECO:0005634) - Experimental technique details RNAse protection (ECO:0000288) fpvI (PA2387) , pvdA (PA2386) , pvdQ (PA2385) , fpvR (PA2388) , pvdR (PA2389) , pvdT (PA2390) , opmQ (PA2391) , pvdP (PA2392)
    ... ... fpvI pvdA pvdQ fpvR pvdR pvdT opmQ pvdP
    411 8633080
    NC_002516.2 Q03456 not specified GAAAACAATAATCAATCTC -[5000326:5000344] Experimental technique details DNAse footprinting (ECO:0005631) - Experimental technique details EMSA (ECO:0001807) - Experimental technique details Genomic SELEX (ECO:0005634) - Experimental technique details RNAse protection (ECO:0000288) PA4471 , fumC1 (PA4470) , PA4469 , sodM (PA4468) , PA4467 , PA4466 , PA4465 , ptsN (PA4464) , PA4463 , rpoN (PA4462) , pmbA (PA4472) , PA4473 , PA4474 , PA4475 , PA4476 , cafA (PA4477) , PA4478 , mreD (PA4479) , mreC (PA4480) , mreB (PA4481)
    ... ... 5000000 PA4471 fumC1 PA4469 sodM PA4467 PA4466 PA4465 ptsN PA4463 rpoN pmbA PA4473 PA4474 PA4475 PA4476 cafA PA4478 mreD mreC mreB
    411 8633080
    NC_002516.2 Q03456 not specified GAAGATGGTAATTAATTGC +[1053332:1053350] Experimental technique details DNAse footprinting (ECO:0005631) - Experimental technique details EMSA (ECO:0001807) - Experimental technique details Genomic SELEX (ECO:0005634) - Experimental technique details RNAse protection (ECO:0000288) pmpR (PA0964) , ruvB (PA0967) , ruvA (PA0966) , ruvC (PA0965) , aspS (PA0963) , PA0968 , tolQ (PA0969) , tolR (PA0970) , tolA (PA0971) , tolB (PA0972) , oprL (PA0973) , PA0974 , PA0975 , PA0976 , PA0976.1 , PA0977
    ... ... pmpR ruvB ruvA ruvC aspS PA0968 tolQ tolR tolA tolB oprL PA0974 PA0975 PA0976 PA0976.1 PA0977
    411 8633080
    NC_002516.2 Q03456 not specified GACATTGAGATTCAATAAC +[732859:732877] Experimental technique details DNAse footprinting (ECO:0005631) - Experimental technique details EMSA (ECO:0001807) - Experimental technique details Genomic SELEX (ECO:0005634) - Experimental technique details RNAse protection (ECO:0000288) hemO (PA0672) , PA0671 , PA0670 , PA0669 , PA0673
    ... ... hemO PA0671 PA0670 PA0669 PA0673
    411 8633080
    NC_002516.2 Q03456 not specified GCAAACGATATTCATTATC +[2982461:2982479] Experimental technique details DNAse footprinting (ECO:0005631) - Experimental technique details EMSA (ECO:0001807) - Experimental technique details Genomic SELEX (ECO:0005634) - Experimental technique details RNAse protection (ECO:0000288) nuoA (PA2637) , PA2636 , PA2635 , nuoB (PA2638) , nuoD (PA2639) , nuoE (PA2640) , nuoF (PA2641) , nuoG (PA2642) , nuoH (PA2643) , nuoI (PA2644) , nuoJ (PA2645) , nuoK (PA2646) , nuoL (PA2647) , nuoM (PA2648) , nuoN (PA2649) , PA2650
    ... ... nuoA PA2636 PA2635 nuoB nuoD nuoE nuoF nuoG nuoH nuoI nuoJ nuoK nuoL nuoM nuoN PA2650
    411 8633080
    NC_002516.2 Q03456 not specified GCCAATGATATTGATTTGC -[5056048:5056066] Experimental technique details DNAse footprinting (ECO:0005631) - Experimental technique details EMSA (ECO:0001807) - Experimental technique details Genomic SELEX (ECO:0005634) - Experimental technique details RNAse protection (ECO:0000288) PA4515 , PA4514 , PA4516 , PA4517 , PA4518 , speC (PA4519)
    ... ... PA4515 PA4514 PA4516 PA4517 PA4518 speC
    411 8633080
    NC_002516.2 Q03456 not specified GGAAATGAGAATCATTATT +[5283966:5283984] Experimental technique details DNAse footprinting (ECO:0005631) - Experimental technique details EMSA (ECO:0001807) - Experimental technique details Genomic SELEX (ECO:0005634) - Experimental technique details RNAse protection (ECO:0000288) prrF1 (PA4704.1) , cbpA (PA4704) , PA4703 , prrF2 (PA4704.2) , PA4705 , PA4706 , PA4707 , phuT (PA4708) , PA4709
    ... ... prrF1 cbpA PA4703 prrF2 PA4705 PA4706 PA4707 phuT PA4709
    411 8633080
    NC_002516.2 Q03456 not specified GTAATTGACAATCATTATC +[2722072:2722090] Experimental technique details DNAse footprinting (ECO:0005631) - Experimental technique details EMSA (ECO:0001807) - Experimental technique details Genomic SELEX (ECO:0005634) - Experimental technique details RNAse protection (ECO:0000288) pvdS (PA2426) , pvdG (PA2425) , pvdL (PA2424) , PA2427 , PA2428
    ... ... pvdS pvdG pvdL PA2427 PA2428
    411 8633080
    NC_002516.2 Q03456 not specified GTTATTGAGAATCATTGGC -[1433130:1433148] Experimental technique details DNAse footprinting (ECO:0005631) - Experimental technique details EMSA (ECO:0001807) - Experimental technique details Genomic SELEX (ECO:0005634) - Experimental technique details RNAse protection (ECO:0000288) cyoE (PA1321) , cyoD (PA1320) , cyoC (PA1319) , cyoB (PA1318) , cyoA (PA1317) , PA1322 , PA1323 , PA1324 , PA1324.1 , PA1325 , ilvA2 (PA1326) , PA1327 , PA1328 , PA1329 , PA1330 , PA1331
    ... ... cyoE cyoD cyoC cyoB cyoA PA1322 PA1323 PA1324 PA1324.1 PA1325 ilvA2 PA1327 PA1328 PA1329 PA1330 PA1331
    411 8633080
    NC_002516.2 Q03456 not specified TAAATTTATAATAATTCTC +[2640954:2640972] Experimental technique details DNAse footprinting (ECO:0005631) - Experimental technique details EMSA (ECO:0001807) - Experimental technique details Genomic SELEX (ECO:0005634) - Experimental technique details RNAse protection (ECO:0000288) fpvI (PA2387) , pvdA (PA2386) , pvdQ (PA2385) , fpvR (PA2388) , pvdR (PA2389) , pvdT (PA2390) , opmQ (PA2391) , pvdP (PA2392)
    ... ... fpvI pvdA pvdQ fpvR pvdR pvdT opmQ pvdP
    411 8633080
    NC_002516.2 Q03456 not specified TCCAATGCAAATCAATATC +[5056042:5056060] Experimental technique details DNAse footprinting (ECO:0005631) - Experimental technique details EMSA (ECO:0001807) - Experimental technique details Genomic SELEX (ECO:0005634) - Experimental technique details RNAse protection (ECO:0000288) PA4515 , PA4514 , PA4516 , PA4517 , PA4518 , speC (PA4519)
    ... ... PA4515 PA4514 PA4516 PA4517 PA4518 speC
    411 8633080
    NC_002516.2 Q03456 not specified TTTATCGCAACTGATTATC -[5053497:5053515] Experimental technique details DNAse footprinting (ECO:0005631) - Experimental technique details EMSA (ECO:0001807) - Experimental technique details Genomic SELEX (ECO:0005634) - Experimental technique details RNAse protection (ECO:0000288) PA4513 , PA4514
    ... ... PA4513 PA4514
    411 8633080
    NC_002516.2 Q03456 not specified TTTTATGATAATGATTTTC +[3819143:3819161] Experimental technique details DNAse footprinting (ECO:0005631) - Experimental technique details EMSA (ECO:0001807) - Experimental technique details Genomic SELEX (ECO:0005634) - Experimental technique details RNAse protection (ECO:0000288) PA3410 , PA3409 , PA3411 , PA3412
    ... ... PA3410 PA3409 PA3411 PA3412
    411 8633080
    NC_002516.2 Q03456 not specified ACGAACGTGAATCATTCTC +[3038080:3038098] Experimental technique details DNAse footprinting (ECO:0005631) - Experimental technique details EMSA (ECO:0001807) - Experimental technique details Genomic SELEX (ECO:0005634) pfeR (PA2686) , PA2685 , PA2684 , pfeS (PA2687) , pfeA (PA2688) , PA2689
    ... ... pfeR PA2685 PA2684 pfeS pfeA PA2689
    412 8633080
    NC_002516.2 Q03456 not specified CTGAATGATAATAATTATC -[6225971:6225989] Experimental technique details DNAse footprinting (ECO:0005631) - Experimental technique details EMSA (ECO:0001807) - Experimental technique details Genomic SELEX (ECO:0005634) tonB1 (PA5531) , PA5532 , PA5533
    ... ... tonB1 PA5532 PA5533
    412 8633080
    NC_002516.2 Q03456 not specified GATAATGAGAATAGTTATT +[5284178:5284196] Experimental technique details DNAse footprinting (ECO:0005631) - Experimental technique details EMSA (ECO:0001807) - Experimental technique details Genomic SELEX (ECO:0005634) prrF2 (PA4704.2) , prrF1 (PA4704.1) , cbpA (PA4704) , PA4703 , PA4705 , PA4706 , PA4707 , phuT (PA4708) , PA4709
    ... ... prrF2 prrF1 cbpA PA4703 PA4705 PA4706 PA4707 phuT PA4709
    412 8633080
    NC_002516.2 Q03456 not specified TCTTCTGATAATTATTATC +[6225965:6225983] Experimental technique details DNAse footprinting (ECO:0005631) - Experimental technique details EMSA (ECO:0001807) - Experimental technique details Genomic SELEX (ECO:0005634) tonB1 (PA5531) , PA5532 , PA5533
    ... ... tonB1 PA5532 PA5533
    412 8633080
    NC_002516.2 Q03456 not specified TGTAATAATAACTATTCTC -[5284184:5284202] Experimental technique details DNAse footprinting (ECO:0005631) - Experimental technique details EMSA (ECO:0001807) - Experimental technique details Genomic SELEX (ECO:0005634) prrF2 (PA4704.2) , prrF1 (PA4704.1) , cbpA (PA4704) , PA4703 , PA4705 , PA4706 , PA4707 , phuT (PA4708) , PA4709
    ... ... prrF2 prrF1 cbpA PA4703 PA4705 PA4706 PA4707 phuT PA4709
    412 8633080
    NC_002516.2 Q03456 not specified GATATTAATACCCATTTCA +[2446105:2446123] Experimental technique details DNAse footprinting (ECO:0005631) - Experimental technique details EMSA (ECO:0001807) - Experimental technique details Genomic SELEX (ECO:0005634) PA2223 , PA2222 , PA2224
    ... ... PA2223 PA2222 PA2224
    412 8633080
    NC_002516.2 Q03456 dimer GTAATTGACAATCATTATC +[2722072:2722090] Experimental technique details Beta-gal reporter assay - Experimental technique details Consensus search (ECO:0005624) - Experimental technique details DNA-array expression analysis (ECO:0005525) pvdS (PA2426) , PA2428 , PA2427 , pvdL (PA2424) , pvdG (PA2425)
    ... ... pvdS PA2428 PA2427 pvdL pvdG
    407 12207696
    NC_002516.2 Q03456 dimer GATAATAAGAATTATTCTC +[5117920:5117938] Experimental technique details Beta-gal reporter assay - Experimental technique details Consensus search (ECO:0005624) - Experimental technique details DNA-array expression analysis (ECO:0005525) PA4570 , ispB (PA4569)
    ... ... PA4570 ispB
    407 12207696
    NC_002516.2 Q03456 dimer GACATTGAGATTCAATAAC +[732859:732877] Experimental technique details Beta-gal reporter assay - Experimental technique details Consensus search (ECO:0005624) - Experimental technique details DNA-array expression analysis (ECO:0005525) hemO (PA0672) , PA0673 , PA0669 , PA0670 , PA0671
    ... ... hemO PA0673 PA0669 PA0670 PA0671
    407 12207696
    NC_002516.2 Q03456 dimer GCGAATGATAATACATATC -[1409835:1409853] Experimental technique details Beta-gal reporter assay - Experimental technique details Consensus search (ECO:0005624) - Experimental technique details DNA-array expression analysis (ECO:0005525) PA1301 , PA1300 , PA1309 , PA1308 , PA1307 , PA1306 , PA1305 , PA1304 , PA1303 , PA1302 , PA1296 , PA1297 , PA1298 , PA1299
    ... ... PA1301 PA1300 PA1309 PA1308 PA1307 PA1306 PA1305 PA1304 PA1303 PA1302 PA1296 PA1297 PA1298 PA1299
    407 12207696
    NC_002516.2 Q03456 dimer TGTAATAAGAATCAGTCTC +[3817362:3817380] Experimental technique details Beta-gal reporter assay - Experimental technique details Consensus search (ECO:0005624) - Experimental technique details DNA-array expression analysis (ECO:0005525) hasAp (PA3407) , hasR (PA3408) , PA3412 , PA3411 , PA3410 , PA3409
    ... ... hasAp hasR PA3412 PA3411 PA3410 PA3409
    407 12207696
    NC_002516.2 Q03456 dimer AAAAACGAGAATTATTCGC +[534060:534078] Experimental technique details Beta-gal reporter assay - Experimental technique details Consensus search (ECO:0005624) - Experimental technique details DNA-array expression analysis (ECO:0005525) PA0472 , PA0471 , PA0476 , PA0475 , PA0474 , PA0473 , fiuA (PA0470)
    ... ... PA0472 PA0471 PA0476 PA0475 PA0474 PA0473 fiuA
    407 12207696
    NC_002516.2 Q03456 dimer GCAAATGCTAATCATTCGC +[2222803:2222821] Experimental technique details Beta-gal reporter assay - Experimental technique details Consensus search (ECO:0005624) - Experimental technique details DNA-array expression analysis (ECO:0005525) PA2034 , PA2033 , PA2035 , PA2032
    ... ... PA2034 PA2033 PA2035 PA2032
    407 12207696
    NC_002516.2 Q03456 dimer ACGATTGCTAATCAATCTT +[1015907:1015925] Experimental technique details Beta-gal reporter assay - Experimental technique details Consensus search (ECO:0005624) - Experimental technique details DNA-array expression analysis (ECO:0005525) PA0930 , PA0929 , PA0922.1 , dinB (PA0923) , PA0924 , PA0925 , PA0926 , ldhA (PA0927) , gacS (PA0928)
    ... ... PA0930 PA0929 PA0922.1 dinB PA0924 PA0925 PA0926 ldhA gacS
    407 12207696
    NC_002516.2 Q03456 dimer GCTGATTACCATCATGATG -[4885992:4886010] Experimental technique details Beta-gal reporter assay - Experimental technique details Consensus search (ECO:0005624) - Experimental technique details DNA-array expression analysis (ECO:0005525) PA4359 , PA4357 , PA4358 , PA4354 , PA4355 , xenB (PA4356)
    ... ... PA4359 PA4357 PA4358 PA4354 PA4355 xenB
    407 12207696
    NC_002516.2 Q03456 dimer GCTAATGCAAATAATTATC -[5289123:5289141] Experimental technique details Beta-gal reporter assay - Experimental technique details Consensus search (ECO:0005624) - Experimental technique details DNA-array expression analysis (ECO:0005525) phuT (PA4708) , PA4709 , PA4713 , PA4712 , PA4711 , phuR (PA4710) , PA4703 , cbpA (PA4704) , prrF1 (PA4704.1) , prrF2 (PA4704.2) , PA4705 , PA4706 , PA4707
    ... ... phuT PA4709 PA4713 PA4712 PA4711 phuR PA4703 cbpA prrF1 prrF2 PA4705 PA4706 PA4707
    407 12207696
    NC_002516.2 Q03456 dimer TCCAATGCAAATCAATATC +[5056042:5056060] Experimental technique details Beta-gal reporter assay - Experimental technique details Consensus search (ECO:0005624) - Experimental technique details DNA-array expression analysis (ECO:0005525) PA4516 , PA4515 , speC (PA4519) , PA4518 , PA4517 , PA4514
    ... ... PA4516 PA4515 speC PA4518 PA4517 PA4514
    407 12207696
    NC_002516.2 Q03456 dimer GATAATTATTTGCATTAGC +[5289123:5289141] Experimental technique details Beta-gal reporter assay - Experimental technique details Consensus search (ECO:0005624) - Experimental technique details DNA-array expression analysis (ECO:0005525) phuR (PA4710) , PA4713 , PA4712 , PA4711 , PA4703 , cbpA (PA4704) , prrF1 (PA4704.1) , prrF2 (PA4704.2) , PA4705 , PA4706 , PA4707 , phuT (PA4708) , PA4709
    ... ... phuR PA4713 PA4712 PA4711 PA4703 cbpA prrF1 prrF2 PA4705 PA4706 PA4707 phuT PA4709
    407 12207696
    NC_002516.2 Q03456 dimer AAAAATGCAAATCTTTCGC +[4898083:4898101] Experimental technique details Beta-gal reporter assay - Experimental technique details Consensus search (ECO:0005624) - Experimental technique details DNA-array expression analysis (ECO:0005525) icmP (PA4370) , bifA (PA4367) , PA4368 , PA4369
    ... ... icmP bifA PA4368 PA4369
    407 12207696
    NC_002516.2 Q03456 dimer GATAATGAGATTGATTATT +[5000320:5000338] Experimental technique details Beta-gal reporter assay - Experimental technique details Consensus search (ECO:0005624) - Experimental technique details DNA-array expression analysis (ECO:0005525) PA4467 , sodM (PA4468) , PA4469 , fumC1 (PA4470) , PA4471 , mreB (PA4481) , mreC (PA4480) , mreD (PA4479) , PA4478 , cafA (PA4477) , PA4476 , PA4475 , PA4474 , PA4473 , pmbA (PA4472) , rpoN (PA4462) , PA4463 , ptsN (PA4464) , PA4465 , PA4466
    ... ... 5000000 PA4467 sodM PA4469 fumC1 PA4471 mreB mreC mreD PA4478 cafA PA4476 PA4475 PA4474 PA4473 pmbA rpoN PA4463 ptsN PA4465 PA4466
    407 12207696
    NC_002516.2 Q03456 dimer GAAGATGGTAATTAATTGC +[1053332:1053350] Experimental technique details Consensus search (ECO:0005624) - Experimental technique details DNA-array expression analysis (ECO:0005525) PA0968 , PA0976.1 , PA0976 , PA0975 , PA0974 , oprL (PA0973) , tolB (PA0972) , tolA (PA0971) , tolR (PA0970) , tolQ (PA0969) , aspS (PA0963) , pmpR (PA0964) , ruvC (PA0965) , ruvA (PA0966) , ruvB (PA0967) , PA0977
    ... ... PA0968 PA0976.1 PA0976 PA0975 PA0974 oprL tolB tolA tolR tolQ aspS pmpR ruvC ruvA ruvB PA0977
    408 12207696
    NC_002516.2 Q03456 dimer CTTGATGAGAATTATTATA -[2640960:2640978] Experimental technique details Consensus search (ECO:0005624) - Experimental technique details DNA-array expression analysis (ECO:0005525) fpvI (PA2387) , pvdP (PA2392) , opmQ (PA2391) , pvdT (PA2390) , pvdR (PA2389) , fpvR (PA2388) , pvdQ (PA2385) , pvdA (PA2386)
    ... ... fpvI pvdP opmQ pvdT pvdR fpvR pvdQ pvdA
    408 12207696
    NC_002516.2 Q03456 dimer CTGAATGATAATAATTATC -[6225971:6225989] Experimental technique details Consensus search (ECO:0005624) - Experimental technique details DNA-array expression analysis (ECO:0005525) tonB1 (PA5531) , PA5533 , PA5532
    ... ... tonB1 PA5533 PA5532
    408 12207696
    NC_002516.2 Q03456 dimer CATAATGATAAGCATTATC -[4726832:4726850] Experimental technique details Consensus search (ECO:0005624) - Experimental technique details DNA-array expression analysis (ECO:0005525) PA4220 , fptA (PA4221) , pchE (PA4226) , pchF (PA4225) , pchG (PA4224) , PA4223 , PA4222
    ... ... PA4220 fptA pchE pchF pchG PA4223 PA4222
    408 12207696
    NC_002516.2 Q03456 dimer ACGAATGATAAGAAATCTC +[5875615:5875633] Experimental technique details Consensus search (ECO:0005624) - Experimental technique details DNA-array expression analysis (ECO:0005525) PA5217 , PA5228 , ssrS (PA5227.1) , PA5227 , PA5226 , PA5225 , pepP (PA5224) , ubiH (PA5223) , PA5222 , PA5221 , PA5220 , PA5219 , PA5218 , PA5216
    ... ... PA5217 PA5228 ssrS PA5227 PA5226 PA5225 pepP ubiH PA5222 PA5221 PA5220 PA5219 PA5218 PA5216
    408 12207696
    NC_002516.2 Q03456 dimer AATAATGAGAATGATTGTC -[3949790:3949808] Experimental technique details Consensus search (ECO:0005624) - Experimental technique details DNA-array expression analysis (ECO:0005525) PA3530 , PA3529
    ... ... PA3530 PA3529
    408 12207696
    NC_002516.2 Q03456 dimer GACAATGCGATTCATTATC -[2786908:2786926] Experimental technique details Consensus search (ECO:0005624) - Experimental technique details DNA-array expression analysis (ECO:0005525) foxI (PA2468) , foxR (PA2467) , foxA (PA2466) , PA2465 , PA2464 , PA2469 , gtdA (PA2470) , PA2471 , PA2472 , PA2473 , PA2474 , PA2475 , dsbG (PA2476) , PA2477 , PA2478
    ... ... foxI foxR foxA PA2465 PA2464 PA2469 gtdA PA2471 PA2472 PA2473 PA2474 PA2475 dsbG PA2477 PA2478
    408 12207696
    NC_002516.2 Q03456 dimer GATAATGGCGATCTTCATC +[2639620:2639638] Experimental technique details Consensus search (ECO:0005624) - Experimental technique details DNA-array expression analysis (ECO:0005525) pvdQ (PA2385) , pvdA (PA2386) , fpvI (PA2387)
    ... ... pvdQ pvdA fpvI
    408 12207696
    NC_002516.2 Q03456 dimer GCAAATGAAAACTATTATC +[5491220:5491238] Experimental technique details Consensus search (ECO:0005624) - Experimental technique details DNA-array expression analysis (ECO:0005525) PA4896 , PA4895 , PA4894 , ureG (PA4893) , ureF (PA4892) , ureE (PA4891) , PA4897 , opdK (PA4898) , PA4899 , PA4900 , mdlC (PA4901) , PA4902 , PA4903
    ... ... PA4896 PA4895 PA4894 ureG ureF ureE PA4897 opdK PA4899 PA4900 mdlC PA4902 PA4903
    408 12207696
    NC_002516.2 Q03456 dimer GGAAATGAGATTTATTATC -[4742369:4742387] Experimental technique details Consensus search (ECO:0005624) - Experimental technique details DNA-array expression analysis (ECO:0005525) pchR (PA4227) , pchD (PA4228) , pchC (PA4229) , pchB (PA4230) , pchA (PA4231) , ssb (PA4232) , PA4233
    ... ... pchR pchD pchC pchB pchA ssb PA4233
    408 12207696
    NC_002516.2 Q03456 dimer TAAAATGATAACTATTATC +[4367230:4367248] Experimental technique details Consensus search (ECO:0005624) - Experimental technique details DNA-array expression analysis (ECO:0005525) PA3899 , PA3900 , PA3898 , PA3897 , PA3896 , PA3895 , fecA (PA3901) , PA3902
    ... ... PA3899 PA3900 PA3898 PA3897 PA3896 PA3895 fecA PA3902
    408 12207696
    NC_002516.2 Q03456 dimer TAAATTTATAATAATTCTC +[2640954:2640972] Experimental technique details Consensus search (ECO:0005624) - Experimental technique details DNA-array expression analysis (ECO:0005525) fpvI (PA2387) , pvdA (PA2386) , pvdQ (PA2385) , fpvR (PA2388) , pvdR (PA2389) , pvdT (PA2390) , opmQ (PA2391) , pvdP (PA2392)
    ... ... fpvI pvdA pvdQ fpvR pvdR pvdT opmQ pvdP
    408 12207696
    NC_002516.2 Q03456 dimer TTTTATGATAATGATTTTC +[3819143:3819161] Experimental technique details Consensus search (ECO:0005624) - Experimental technique details DNA-array expression analysis (ECO:0005525) PA3410 , PA3409 , PA3411 , PA3412
    ... ... PA3410 PA3409 PA3411 PA3412
    408 12207696
    NC_002516.2 Q03456 not specified CCAAATGGGAATGACTCTC +[4652467:4652485] Experimental technique details FURTA (ECO:0005633) - Experimental technique details qPCR [quantitative real-time] (ECO:0005660) PA4156 , PA4155 , PA4157 , fepC (PA4158) , fepB (PA4159) , fepD (PA4160) , fepG (PA4161) , PA4162
    ... ... PA4156 PA4155 PA4157 fepC fepB fepD fepG PA4162
    523 21546589

    Fur - UniProtKB: P0A9A9 regulon and binding site collection of Pseudomonas aeruginosa PAO1


    Sites are listed as curated.

    CAATAATCAATCTCATTATC

    Sites are listed after the alignment process. For alignment of variable-length binding sites, LASAGNA is used.

    CAATAATCAATCTCATTATC

    For the selected transcription factor and species, the list of curated binding sites in the database are displayed below. Gene regulation diagrams show binding sites, positively-regulated genes, negatively-regulated genes, both positively and negatively regulated genes, genes with unspecified type of regulation.

      Genome TF TF conformation Site sequence Site location Experimental techniques Gene regulation Curations PMIDs
      NC_002516.2 P0A9A9 not specified CAATAATCAATCTCATTATC -[5000320:5000339] Experimental technique details EMSA (ECO:0001807) - Experimental technique details Visual sequence inspection (nan) PA4471 , fumC1 (PA4470) , PA4469 , sodM (PA4468) , PA4467
      ... ... 5000000 PA4471 fumC1 PA4469 sodM PA4467
      733 8806672

      All binding sites in split view are combined and a sequence logo is generated. Note that it may contain binding site sequences from different transcription factors and different species. To see individiual sequence logos and curation details go to split view.


      Sites are listed as curated.

      CAATAATCAATCTCATTATC
      TCTTCTGATAATTATTATC
      CTGAATGATAATAATTATC
      ACGAACGTGAATCATTCTC
      GGAAATGAGAATCATTATT
      GATAATGAGAATAGTTATT
      GAAAACAATAATCAATCTC
      GATAATGAGATTGATTATT
      CAAAACGCATATCTGAATC
      GATAATTATTTGCATTAGC
      AAAAACGAGAATTATTCGC
      ACGATTGAAAATCATTATC
      ACGATTGCTAATCAATCTT
      ATAATTGAGAATCGTTATT
      CTGAATGAAACCCAATCTT
      CTTGATGAGAATTATTATA
      GAAAACAATAATCAATCTC
      GAAGATGGTAATTAATTGC
      GACATTGAGATTCAATAAC
      GCAAACGATATTCATTATC
      GCCAATGATATTGATTTGC
      GGAAATGAGAATCATTATT
      GTAATTGACAATCATTATC
      GTTATTGAGAATCATTGGC
      TAAATTTATAATAATTCTC
      TCCAATGCAAATCAATATC
      TTTATCGCAACTGATTATC
      TTTTATGATAATGATTTTC
      ACGAACGTGAATCATTCTC
      CTGAATGATAATAATTATC
      GATAATGAGAATAGTTATT
      TCTTCTGATAATTATTATC
      TGTAATAATAACTATTCTC
      GATATTAATACCCATTTCA
      GTAATTGACAATCATTATC
      GATAATAAGAATTATTCTC
      GACATTGAGATTCAATAAC
      GCGAATGATAATACATATC
      TGTAATAAGAATCAGTCTC
      AAAAACGAGAATTATTCGC
      GCAAATGCTAATCATTCGC
      ACGATTGCTAATCAATCTT
      GCTGATTACCATCATGATG
      GCTAATGCAAATAATTATC
      TCCAATGCAAATCAATATC
      GATAATTATTTGCATTAGC
      AAAAATGCAAATCTTTCGC
      GATAATGAGATTGATTATT
      GAAGATGGTAATTAATTGC
      CTTGATGAGAATTATTATA
      CTGAATGATAATAATTATC
      CATAATGATAAGCATTATC
      ACGAATGATAAGAAATCTC
      AATAATGAGAATGATTGTC
      GACAATGCGATTCATTATC
      GATAATGGCGATCTTCATC
      GCAAATGAAAACTATTATC
      GGAAATGAGATTTATTATC
      TAAAATGATAACTATTATC
      TAAATTTATAATAATTCTC
      TTTTATGATAATGATTTTC
      CCAAATGGGAATGACTCTC

      Sites are listed after the alignment process. For alignment of variable-length binding sites, LASAGNA is used.

      GATAATGAGATTGATTATTG
      TCTTCTGATAATTATTATCA
      CTGAATGATAATAATTATCA
      ACGAACGTGAATCATTCTCA
      GGAAATGAGAATCATTATTA
      GATAATGAGAATAGTTATTA
      GAAAACAATAATCAATCTCA
      GATAATGAGATTGATTATTG
      CAAAACGCATATCTGAATCC
      GCTAATGCAAATAATTATCA
      AAAAACGAGAATTATTCGCA
      ACGATTGAAAATCATTATCA
      ACGATTGCTAATCAATCTTA
      ATAATTGAGAATCGTTATTG
      CTGAATGAAACCCAATCTTA
      CTTGATGAGAATTATTATAA
      GAAAACAATAATCAATCTCA
      GAAGATGGTAATTAATTGCA
      GACATTGAGATTCAATAACG
      GCAAACGATATTCATTATCG
      GCCAATGATATTGATTTGCA
      GGAAATGAGAATCATTATTA
      GTAATTGACAATCATTATCA
      GTTATTGAGAATCATTGGCA
      TAAATTTATAATAATTCTCA
      TCCAATGCAAATCAATATCA
      TTTATCGCAACTGATTATCA
      TTTTATGATAATGATTTTCA
      ACGAACGTGAATCATTCTCA
      CTGAATGATAATAATTATCA
      GATAATGAGAATAGTTATTA
      TCTTCTGATAATTATTATCA
      TGTAATAATAACTATTCTCA
      TGAAATGGGTATTAATATCG
      GTAATTGACAATCATTATCA
      GATAATAAGAATTATTCTCA
      GACATTGAGATTCAATAACG
      GATATGTATTATCATTCGCA
      TGTAATAAGAATCAGTCTCG
      AAAAACGAGAATTATTCGCA
      GCAAATGCTAATCATTCGCA
      ACGATTGCTAATCAATCTTA
      CATCATGATGGTAATCAGCC
      GCTAATGCAAATAATTATCA
      TCCAATGCAAATCAATATCA
      GCTAATGCAAATAATTATCA
      AAAAATGCAAATCTTTCGCA
      GATAATGAGATTGATTATTG
      GAAGATGGTAATTAATTGCA
      CTTGATGAGAATTATTATAA
      CTGAATGATAATAATTATCA
      CATAATGATAAGCATTATCA
      ACGAATGATAAGAAATCTCG
      AATAATGAGAATGATTGTCA
      GACAATGCGATTCATTATCA
      GATAATGGCGATCTTCATCG
      GCAAATGAAAACTATTATCA
      GGAAATGAGATTTATTATCA
      TAAAATGATAACTATTATCA
      TAAATTTATAATAATTCTCA
      TTTTATGATAATGATTTTCA
      CCAAATGGGAATGACTCTCT
      Download data in FASTA format.
      Download data in TSV (tab-separated-value) format. For each binding site, all sources of evidence (i.e. experimental techniques and publication information) are combined into one record.
      Download raw data in TSV format. All reported sites are exported individually.
      Download data in Attribute-Relation File Format (ARFF).
      Download Position-Specific-Frequency-Matrix of the motif in TRANSFAC format.
      Download Position-Specific-Frequency-Matrix of the motif in JASPAR format.
      Download Position-Specific-Frequency-Matrix of the motif in raw FASTA format. The matrix consists of four columns in the order A C G T.