Transcription Factor Binding Site Information

Vibrio cholerae - NC_002506.1
RpoN [UniProtKB:Q9KP49, view regulon]

Supporting Evidence

Binding site Location Publication Experimental techniques used Curation
TGGCATTGAGTTTGC + [137452, 137466] 22723378 Experimental technique details ChIP-PCR (ECO:0005620) - Experimental technique details ChIP-Seq (ECO:0006009) - Experimental technique details RNA-Seq (ECO:0005664) - 9

Regulated genes

Regulated genes for each binding site are displayed below. Gene regulation diagrams show binding sites, positively-regulated genes, negatively-regulated genes, both positively and negatively regulated genes, genes with unspecified type of regulation. For each indvidual site, experimental techniques used to determine the site are also given.

... ... VCA0123 VCA0122 VCA0121 VCA0120 VCA0119 VCA0118 VCA0117 VCA0116 VCA0115 VCA0114 VCA0113 VCA0112 VCA0111 VCA0110 VCA0109 VCA0108 VCA0107 VCA0124
Gene Locus tag Description
VCA0123 VCA0123 vgrG protein
VCA0122 VCA0122 hypothetical protein
VCA0121 VCA0121 hypothetical protein
VCA0120 VCA0120 IcmF-like protein
VCA0119 VCA0119 hypothetical protein
VCA0118 VCA0118 hypothetical protein
VCA0117 VCA0117 sigma-54 dependent transcriptional regulator
VCA0116 VCA0116 clpB protein
VCA0115 VCA0115 hypothetical protein
VCA0114 VCA0114 hypothetical protein
VCA0113 VCA0113 hypothetical protein
VCA0112 VCA0112 hypothetical protein
VCA0111 VCA0111 hypothetical protein
VCA0110 VCA0110 hypothetical protein
VCA0109 VCA0109 hypothetical protein
VCA0108 VCA0108 hypothetical protein
VCA0107 VCA0107 hypothetical protein
VCA0124 VCA0124 hypothetical protein