OhrR - UniProtKB: Q9HZZ4 regulon and binding site collection of Pseudomonas aeruginosa PAO1


Sites are listed as curated.

AATTCATGCAC
GTGCCCTACTT
ACTTCACGCAC
GCGCAAGAACT

Sites are listed after the alignment process. For alignment of variable-length binding sites, LASAGNA is used.

AATTCATGCAC
AAGTAGGGCAC
ACTTCACGCAC
AGTTCTTGCGC

For the selected transcription factor and species, the list of curated binding sites in the database are displayed below. Gene regulation diagrams show binding sites, positively-regulated genes, negatively-regulated genes, both positively and negatively regulated genes, genes with unspecified type of regulation.

    Genome TF TF conformation Site sequence Site location Experimental techniques Gene regulation Curations PMIDs
    NC_002516.2 Q9HZZ4 not specified AATTCATGCAC +[3203359:3203369] Experimental technique details Beta-gal reporter assay - Experimental technique details DNAse footprinting (ECO:0005631) - Experimental technique details EMSA (ECO:0001807) ohrR (PA2849) , PA2852 , efp (PA2851) , ohr (PA2850) , PA2843 , PA2844 , PA2845 , PA2846 , PA2847 , PA2848
    ... ... ohrR PA2852 efp ohr PA2843 PA2844 PA2845 PA2846 PA2847 PA2848
    353 20139188
    NC_002516.2 Q9HZZ4 not specified GTGCCCTACTT +[3203371:3203381] Experimental technique details Beta-gal reporter assay - Experimental technique details DNAse footprinting (ECO:0005631) - Experimental technique details EMSA (ECO:0001807) ohrR (PA2849) , PA2852 , efp (PA2851) , ohr (PA2850) , PA2843 , PA2844 , PA2845 , PA2846 , PA2847 , PA2848
    ... ... ohrR PA2852 efp ohr PA2843 PA2844 PA2845 PA2846 PA2847 PA2848
    353 20139188
    NC_002516.2 Q9HZZ4 not specified ACTTCACGCAC +[3203938:3203948] Experimental technique details Beta-gal reporter assay - Experimental technique details DNAse footprinting (ECO:0005631) - Experimental technique details EMSA (ECO:0001807) - Experimental technique details Northern blot (ECO:0005653) - Experimental technique details qRT-PCR [RNA] (ECO:0001808) - Experimental technique details Site directed mutagenesis (ECO:0005667) ohr (PA2850) , PA2852 , efp (PA2851) , PA2843 , PA2844 , PA2845 , PA2846 , PA2847 , PA2848 , ohrR (PA2849)
    ... ... ohr PA2852 efp PA2843 PA2844 PA2845 PA2846 PA2847 PA2848 ohrR
    352 20139188
    NC_002516.2 Q9HZZ4 not specified GCGCAAGAACT +[3203958:3203968] Experimental technique details Beta-gal reporter assay - Experimental technique details DNAse footprinting (ECO:0005631) - Experimental technique details EMSA (ECO:0001807) - Experimental technique details Northern blot (ECO:0005653) - Experimental technique details qRT-PCR [RNA] (ECO:0001808) - Experimental technique details Site directed mutagenesis (ECO:0005667) ohr (PA2850) , PA2852 , efp (PA2851) , PA2843 , PA2844 , PA2845 , PA2846 , PA2847 , PA2848 , ohrR (PA2849)
    ... ... ohr PA2852 efp PA2843 PA2844 PA2845 PA2846 PA2847 PA2848 ohrR
    352 20139188

    All binding sites in split view are combined and a sequence logo is generated. Note that it may contain binding site sequences from different transcription factors and different species. To see individiual sequence logos and curation details go to split view.


    Sites are listed as curated.

    AATTCATGCAC
    GTGCCCTACTT
    ACTTCACGCAC
    GCGCAAGAACT

    Sites are listed after the alignment process. For alignment of variable-length binding sites, LASAGNA is used.

    AATTCATGCAC
    AAGTAGGGCAC
    ACTTCACGCAC
    AGTTCTTGCGC
    Download data in FASTA format.
    Download data in TSV (tab-separated-value) format. For each binding site, all sources of evidence (i.e. experimental techniques and publication information) are combined into one record.
    Download raw data in TSV format. All reported sites are exported individually.
    Download data in Attribute-Relation File Format (ARFF).
    Download Position-Specific-Frequency-Matrix of the motif in TRANSFAC format.
    Download Position-Specific-Frequency-Matrix of the motif in JASPAR format.
    Download Position-Specific-Frequency-Matrix of the motif in raw FASTA format. The matrix consists of four columns in the order A C G T.