IolR - UniProtKB: M4MS71 regulon and binding site collection of Sinorhizobium meliloti 2011


Sites are listed as curated.

CGAACAAATATTCC
CGAACAAATATTCC
AGAATGGAAATTCC
GGAATAAATATTCC

Sites are listed after the alignment process. For alignment of variable-length binding sites, LASAGNA is used.

CGAACAAATATTCC
CGAACAAATATTCC
AGAATGGAAATTCC
GGAATAAATATTCC

For the selected transcription factor and species, the list of curated binding sites in the database are displayed below. Gene regulation diagrams show binding sites, positively-regulated genes, negatively-regulated genes, both positively and negatively regulated genes, genes with unspecified type of regulation.

    Genome TF TF conformation Site sequence Site location Experimental techniques Gene regulation Curations PMIDs
    NC_020528.1 M4MS71 not specified CGAACAAATATTCC -[388291:388304] Experimental technique details EMSA (ECO:0001807) - Experimental technique details Visual sequence inspection (nan) SM2011_c01163 , iolR (SM2011_c01164) , SM2011_c01162
    ... ... SM2011_c01163 iolR SM2011_c01162
    986 21784930
    NC_020528.1 M4MS71 not specified CGAACAAATATTCC -[388291:388304] Experimental technique details EMSA (ECO:0001807) - Experimental technique details Visual sequence inspection (nan) SM2011_c01163 , iolR (SM2011_c01164) , SM2011_c01162
    ... ... SM2011_c01163 iolR SM2011_c01162
    986 21784930
    NC_020528.1 M4MS71 not specified AGAATGGAAATTCC -[385902:385915] Experimental technique details EMSA (ECO:0001807) - Experimental technique details Visual sequence inspection (nan) iolC (SM2011_c01165) , iolD (SM2011_c01166) , iolE (SM2011_c00433)
    ... ... iolC iolD iolE
    986 21784930
    NC_020560.1 M4MS71 not specified GGAATAAATATTCC +[1306642:1306655] Experimental technique details EMSA (ECO:0001807) - Experimental technique details Visual sequence inspection (nan) idhA (SM2011_b20899)
    ... ... idhA
    987 21784930

    All binding sites in split view are combined and a sequence logo is generated. Note that it may contain binding site sequences from different transcription factors and different species. To see individiual sequence logos and curation details go to split view.


    Sites are listed as curated.

    CGAACAAATATTCC
    CGAACAAATATTCC
    AGAATGGAAATTCC
    GGAATAAATATTCC

    Sites are listed after the alignment process. For alignment of variable-length binding sites, LASAGNA is used.

    CGAACAAATATTCC
    CGAACAAATATTCC
    AGAATGGAAATTCC
    GGAATAAATATTCC
    Download data in FASTA format.
    Download data in TSV (tab-separated-value) format. For each binding site, all sources of evidence (i.e. experimental techniques and publication information) are combined into one record.
    Download raw data in TSV format. All reported sites are exported individually.
    Download data in Attribute-Relation File Format (ARFF).
    Download Position-Specific-Frequency-Matrix of the motif in TRANSFAC format.
    Download Position-Specific-Frequency-Matrix of the motif in JASPAR format.
    Download Position-Specific-Frequency-Matrix of the motif in raw FASTA format. The matrix consists of four columns in the order A C G T.