SczA - UniProtKB: Q8DNK2 regulon and binding site collection of Streptococcus pneumoniae R6


Sites are listed as curated.

GGACACTTAAGGCAAATTGTTCAGAACTGAATA
TGAACAAGGTGTTCA

Sites are listed after the alignment process. For alignment of variable-length binding sites, LASAGNA is used.

GGACACTTAAGGCAAATTGTTCAGAACTGAATA
AATGATAATGAACAAGGTGTTCATAAATCTATT

For the selected transcription factor and species, the list of curated binding sites in the database are displayed below. Gene regulation diagrams show binding sites, positively-regulated genes, negatively-regulated genes, both positively and negatively regulated genes, genes with unspecified type of regulation.

    Genome TF TF conformation Site sequence Site location Experimental techniques Gene regulation Curations PMIDs
    NC_003098.1 Q8DNK2 not specified GGACACTTAAGGCAAATTGTTCAGAACTGAATA -[1645608:1645640] Experimental technique details Beta-gal reporter assay - Experimental technique details DNA-array expression analysis (ECO:0005525) - Experimental technique details DNAse footprinting (ECO:0005631) - Experimental technique details EMSA (ECO:0001807) - Experimental technique details Multiple sequence alignment (MSA) (ECO:0005556) - Experimental technique details Site directed mutagenesis (ECO:0005667) czcD (spr1672) , spr1673
    ... ... czcD spr1673
    909 17640279
    NC_003098.1 Q8DNK2 not specified TGAACAAGGTGTTCA -[1645541:1645555] Experimental technique details Beta-gal reporter assay - Experimental technique details DNAse footprinting (ECO:0005631) - Experimental technique details EMSA (ECO:0001807) - Experimental technique details Site directed mutagenesis (ECO:0005667) - Experimental technique details Visual sequence inspection (nan) czcD (spr1672) , spr1673
    ... ... czcD spr1673
    909 17640279

    All binding sites in split view are combined and a sequence logo is generated. Note that it may contain binding site sequences from different transcription factors and different species. To see individiual sequence logos and curation details go to split view.


    Sites are listed as curated.

    GGACACTTAAGGCAAATTGTTCAGAACTGAATA
    TGAACAAGGTGTTCA

    Sites are listed after the alignment process. For alignment of variable-length binding sites, LASAGNA is used.

    GGACACTTAAGGCAAATTGTTCAGAACTGAATA
    AATGATAATGAACAAGGTGTTCATAAATCTATT
    Download data in FASTA format.
    Download data in TSV (tab-separated-value) format. For each binding site, all sources of evidence (i.e. experimental techniques and publication information) are combined into one record.
    Download raw data in TSV format. All reported sites are exported individually.
    Download data in Attribute-Relation File Format (ARFF).
    Download Position-Specific-Frequency-Matrix of the motif in TRANSFAC format.
    Download Position-Specific-Frequency-Matrix of the motif in JASPAR format.
    Download Position-Specific-Frequency-Matrix of the motif in raw FASTA format. The matrix consists of four columns in the order A C G T.