CodY - UniProtKB: B5XI03 regulon and binding site collection of Streptococcus pyogenes NZ131


Sites are listed as curated.

AATATTCAGATAATT
AATTTTCAGTCAATT
TAGTTTCAGAAAATA
AATATTCAGAAAATT
AATTTTCTGAAAAAG
AATTTTCTGAAAAAA
GATTTTCTGAAAAAG
ATTTTTCAGAAAATG
AATTATCAGAAAAGA
AATTTTCTGATAATT
GATTTTCTGAAAAAT
ATTTTTCAGAAAATC
TATTTTCTGAAAATA
ATTTTTCTGAAAATG
CATTTTCAGAAAAAT

Sites are listed after the alignment process. For alignment of variable-length binding sites, LASAGNA is used.

AATATTCAGATAATT
AATTTTCAGTCAATT
TAGTTTCAGAAAATA
AATATTCAGAAAATT
CTTTTTCAGAAAATT
TTTTTTCAGAAAATT
CTTTTTCAGAAAATC
ATTTTTCAGAAAATG
AATTATCAGAAAAGA
AATTATCAGAAAATT
ATTTTTCAGAAAATC
ATTTTTCAGAAAATC
TATTTTCAGAAAATA
ATTTTTCTGAAAATG
ATTTTTCTGAAAATG

For the selected transcription factor and species, the list of curated binding sites in the database are displayed below. Gene regulation diagrams show binding sites, positively-regulated genes, negatively-regulated genes, both positively and negatively regulated genes, genes with unspecified type of regulation.

    Genome TF TF conformation Site sequence Site location Experimental techniques Gene regulation Curations PMIDs
    NC_011375.1 B5XI03 not specified AATATTCAGATAATT +[259881:259895] Experimental technique details Consensus search (ECO:0005624) - Experimental technique details qRT-PCR [RNA] (ECO:0001808) oppA (Spy49_0249) , dacA (Spy49_0248c) , oppB (Spy49_0250) , oppC (Spy49_0251) , oppD (Spy49_0252) , oppF (Spy49_0253)
    ... ... oppA dacA oppB oppC oppD oppF
    873 17510253
    NC_011375.1 B5XI03 not specified AATTTTCAGTCAATT -[286626:286640] Experimental technique details Consensus search (ECO:0005624) - Experimental technique details qRT-PCR [RNA] (ECO:0001808) braB (Spy49_0271c) , Spy49_0272
    ... ... braB Spy49_0272
    873 17510253
    NC_011375.1 B5XI03 not specified TAGTTTCAGAAAATA +[534551:534565] Experimental technique details Consensus search (ECO:0005624) - Experimental technique details qRT-PCR [RNA] (ECO:0001808) Spy49_0540 , Spy49_0539c , dinG (Spy49_0541)
    ... ... Spy49_0540 Spy49_0539c dinG
    873 17510253
    NC_011375.1 B5XI03 not specified AATATTCAGAAAATT +[688779:688793] Experimental technique details Consensus search (ECO:0005624) - Experimental technique details qRT-PCR [RNA] (ECO:0001808) Spy49_0684
    ... ... Spy49_0684
    873 17510253
    NC_011375.1 B5XI03 not specified AATTTTCTGAAAAAG -[1125466:1125480] Experimental technique details Consensus search (ECO:0005624) - Experimental technique details qRT-PCR [RNA] (ECO:0001808) kup (Spy49_1130c)
    ... ... kup
    873 17510253
    NC_011375.1 B5XI03 not specified AATTTTCTGAAAAAA -[1292154:1292168] Experimental technique details Consensus search (ECO:0005624) - Experimental technique details qRT-PCR [RNA] (ECO:0001808) aapA (Spy49_1283c)
    ... ... aapA
    873 17510253
    NC_011375.1 B5XI03 not specified GATTTTCTGAAAAAG -[1308962:1308976] Experimental technique details Consensus search (ECO:0005624) - Experimental technique details qRT-PCR [RNA] (ECO:0001808) tkt (Spy49_1300c)
    ... ... tkt
    873 17510253
    NC_011375.1 B5XI03 not specified ATTTTTCAGAAAATG +[1356437:1356451] Experimental technique details Consensus search (ECO:0005624) - Experimental technique details qRT-PCR [RNA] (ECO:0001808) manL (Spy49_1354) , manM (Spy49_1355) , manN (Spy49_1356) , Spy49_1357
    ... ... manL manM manN Spy49_1357
    873 17510253
    NC_011375.1 B5XI03 not specified AATTATCAGAAAAGA -[1372596:1372610] Experimental technique details Consensus search (ECO:0005624) - Experimental technique details qRT-PCR [RNA] (ECO:0001808) phaB (Spy49_1371c) , Spy49_1370c , fabH (Spy49_1369c) , acpP (Spy49_1368c)
    ... ... phaB Spy49_1370c fabH acpP
    873 17510253
    NC_011375.1 B5XI03 not specified AATTTTCTGATAATT -[1386796:1386810] Experimental technique details Consensus search (ECO:0005624) - Experimental technique details qRT-PCR [RNA] (ECO:0001808) codY (Spy49_1387c) , Spy49_1386c
    ... ... codY Spy49_1386c
    873 17510253
    NC_011375.1 B5XI03 not specified GATTTTCTGAAAAAT -[1433160:1433174] Experimental technique details Consensus search (ECO:0005624) - Experimental technique details qRT-PCR [RNA] (ECO:0001808) uvrA (Spy49_1423c) , pepP (Spy49_1422c) , comEB (Spy49_1421c) , efp (Spy49_1420c) , Spy49_1419c , nusB (Spy49_1418c) , Spy49_1424 , Spy49_1425
    ... ... uvrA pepP comEB efp Spy49_1419c nusB Spy49_1424 Spy49_1425
    873 17510253
    NC_011375.1 B5XI03 not specified ATTTTTCAGAAAATC +[1433160:1433174] Experimental technique details Consensus search (ECO:0005624) - Experimental technique details qRT-PCR [RNA] (ECO:0001808) Spy49_1424 , uvrA (Spy49_1423c) , pepP (Spy49_1422c) , comEB (Spy49_1421c) , efp (Spy49_1420c) , Spy49_1419c , nusB (Spy49_1418c) , Spy49_1425
    ... ... Spy49_1424 uvrA pepP comEB efp Spy49_1419c nusB Spy49_1425
    873 17510253
    NC_011375.1 B5XI03 not specified TATTTTCTGAAAATA -[1526658:1526672] Experimental technique details Consensus search (ECO:0005624) - Experimental technique details qRT-PCR [RNA] (ECO:0001808) pgk (Spy49_1553c)
    ... ... pgk
    873 17510253
    NC_011375.1 B5XI03 not specified ATTTTTCTGAAAATG -[1754965:1754979] Experimental technique details Consensus search (ECO:0005624) - Experimental technique details qRT-PCR [RNA] (ECO:0001808) Spy49_1761c , argS (Spy49_1762) , Spy49_1763
    ... ... Spy49_1761c argS Spy49_1763
    873 17510253
    NC_011375.1 B5XI03 not specified CATTTTCAGAAAAAT +[1754965:1754979] Experimental technique details Consensus search (ECO:0005624) - Experimental technique details qRT-PCR [RNA] (ECO:0001808) argS (Spy49_1762) , Spy49_1761c , Spy49_1763
    ... ... argS Spy49_1761c Spy49_1763
    873 17510253

    All binding sites in split view are combined and a sequence logo is generated. Note that it may contain binding site sequences from different transcription factors and different species. To see individiual sequence logos and curation details go to split view.


    Sites are listed as curated.

    AATATTCAGATAATT
    AATTTTCAGTCAATT
    TAGTTTCAGAAAATA
    AATATTCAGAAAATT
    AATTTTCTGAAAAAG
    AATTTTCTGAAAAAA
    GATTTTCTGAAAAAG
    ATTTTTCAGAAAATG
    AATTATCAGAAAAGA
    AATTTTCTGATAATT
    GATTTTCTGAAAAAT
    ATTTTTCAGAAAATC
    TATTTTCTGAAAATA
    ATTTTTCTGAAAATG
    CATTTTCAGAAAAAT

    Sites are listed after the alignment process. For alignment of variable-length binding sites, LASAGNA is used.

    AATATTCAGATAATT
    AATTTTCAGTCAATT
    TAGTTTCAGAAAATA
    AATATTCAGAAAATT
    CTTTTTCAGAAAATT
    TTTTTTCAGAAAATT
    CTTTTTCAGAAAATC
    ATTTTTCAGAAAATG
    AATTATCAGAAAAGA
    AATTATCAGAAAATT
    ATTTTTCAGAAAATC
    ATTTTTCAGAAAATC
    TATTTTCAGAAAATA
    ATTTTTCTGAAAATG
    ATTTTTCTGAAAATG
    Download data in FASTA format.
    Download data in TSV (tab-separated-value) format. For each binding site, all sources of evidence (i.e. experimental techniques and publication information) are combined into one record.
    Download raw data in TSV format. All reported sites are exported individually.
    Download data in Attribute-Relation File Format (ARFF).
    Download Position-Specific-Frequency-Matrix of the motif in TRANSFAC format.
    Download Position-Specific-Frequency-Matrix of the motif in JASPAR format.
    Download Position-Specific-Frequency-Matrix of the motif in raw FASTA format. The matrix consists of four columns in the order A C G T.