BldD - UniProtKB: Q7AKQ8 regulon and binding site collection of Streptomyces coelicolor A3(2)


Sites are listed as curated.

GGCACTCTACGTGAG
TTCACTCTGCGGAAC
AGTACTCATGGTGAC
CTCACTCCTTGTGAT
AACACTCAGAGGGGT
TTCACCCTATGTGAT
CTTACGGGGTGTGAC
ATCACCCAGAGCGAT
GTCACGCTACGCTCA
GCCACGCTGAGTGAC
TTTACTATGAGTGAC
TGCACGAAGCGTTAT
CGTACTGCACGTGAT
GTAACGCTGCGTAAC
CTCACAGTGAGTTAC
GTGACTGATCGTCAC
GCCACGCGAAGTCGC
TGAACTCGCGGTGGC
ATGACTCACCGTGAC
GTAACTCTCCGCGAC
ACGACGCTGCGTGGG
AATACGCAAGGTTAC
GTCACGCTGCGTGAC
GCAACGCTTCGTGAT
AGTGATCACC
AGTCACGCTACGCTCACG
AGCGACGAAGAGTCACC
AGTGCCTGCACGAAGCGTTATTCTCC

Sites are listed after the alignment process. For alignment of variable-length binding sites, LASAGNA is used.

GGCACTCTACGTGAG
TTCACTCTGCGGAAC
AGTACTCATGGTGAC
CTCACTCCTTGTGAT
AACACTCAGAGGGGT
ATCACATAGGGTGAA
GTCACACCCCGTAAG
ATCGCTCTGGGTGAT
GTCACGCTACGCTCA
GTCACTCAGCGTGGC
GTCACTCATAGTAAA
ATAACGCTTCGTGCA
CGTACTGCACGTGAT
GTAACGCTGCGTAAC
GTAACTCACTGTGAG
GTGACTGATCGTCAC
GCGACTTCGCGTGGC
TGAACTCGCGGTGGC
ATGACTCACCGTGAC
GTAACTCTCCGCGAC
ACGACGCTGCGTGGG
AATACGCAAGGTTAC
GTCACGCTGCGTGAC
GCAACGCTTCGTGAT

For the selected transcription factor and species, the list of curated binding sites in the database are displayed below. Gene regulation diagrams show binding sites, positively-regulated genes, negatively-regulated genes, both positively and negatively regulated genes, genes with unspecified type of regulation.

    Genome TF TF conformation Site sequence Site location Experimental techniques Gene regulation Curations PMIDs
    NC_003888.3 Q7AKQ8 dimer GGCACTCTACGTGAG -[5179541:5179555] Experimental technique details ChIP-chip (ECO:0006007) - Experimental technique details DNA-array expression analysis (ECO:0005525) - Experimental technique details Motif-discovery (ECO:0005558) SCO4767 , SCO4768
    ... ... SCO4767 SCO4768
    919 20979333
    NC_003888.3 Q7AKQ8 dimer TTCACTCTGCGGAAC +[3321145:3321159] Experimental technique details ChIP-chip (ECO:0006007) - Experimental technique details DNA-array expression analysis (ECO:0005525) - Experimental technique details Motif-discovery (ECO:0005558) SCO3034 , SCO3035 , SCO3036 , SCO3037 , SCO3038
    ... ... SCO3034 SCO3035 SCO3036 SCO3037 SCO3038
    919 20979333
    NC_003888.3 Q7AKQ8 dimer AGTACTCATGGTGAC +[1510234:1510248] Experimental technique details ChIP-chip (ECO:0006007) - Experimental technique details DNA-array expression analysis (ECO:0005525) - Experimental technique details Motif-discovery (ECO:0005558) SCO1414 , SCO1415 , SCO1416
    ... ... SCO1414 SCO1415 SCO1416
    919 20979333
    NC_003888.3 Q7AKQ8 dimer CTCACTCCTTGTGAT +[4319376:4319390] Experimental technique details ChIP-chip (ECO:0006007) - Experimental technique details DNA-array expression analysis (ECO:0005525) - Experimental technique details Motif-discovery (ECO:0005558) SCO3926
    ... ... SCO3926
    919 20979333
    NC_003888.3 Q7AKQ8 dimer AACACTCAGAGGGGT +[1650278:1650292] Experimental technique details ChIP-chip (ECO:0006007) - Experimental technique details DNA-array expression analysis (ECO:0005525) - Experimental technique details Motif-discovery (ECO:0005558) SCO1540 , SCOt02 , SCO1541
    ... ... SCO1540 SCOt02 SCO1541
    919 20979333
    NC_003888.3 Q7AKQ8 dimer TTCACCCTATGTGAT +[2235846:2235860] Experimental technique details ChIP-chip (ECO:0006007) - Experimental technique details DNA-array expression analysis (ECO:0005525) - Experimental technique details DNAse footprinting (ECO:0005631) - Experimental technique details Motif-discovery (ECO:0005558) SCO2082 , SCO2081 , SCO2080 , SCO2079 , SCO2078 , SCO2077
    ... ... SCO2082 SCO2081 SCO2080 SCO2079 SCO2078 SCO2077
    919 20979333
    NC_003888.3 Q7AKQ8 dimer CTTACGGGGTGTGAC +[6367441:6367455] Experimental technique details ChIP-chip (ECO:0006007) - Experimental technique details DNA-array expression analysis (ECO:0005525) - Experimental technique details Motif-discovery (ECO:0005558) SCO5820
    ... ... SCO5820
    919 20979333
    NC_003888.3 Q7AKQ8 dimer ATCACCCAGAGCGAT +[6120830:6120844] Experimental technique details ChIP-chip (ECO:0006007) - Experimental technique details DNA-array expression analysis (ECO:0005525) - Experimental technique details Motif-discovery (ECO:0005558) SCO5621 , SCO5622
    ... ... SCO5621 SCO5622
    919 20979333
    NC_003888.3 Q7AKQ8 dimer GTCACGCTACGCTCA +[6120926:6120940] Experimental technique details ChIP-chip (ECO:0006007) - Experimental technique details DNA-array expression analysis (ECO:0005525) - Experimental technique details Motif-discovery (ECO:0005558) SCO5621 , SCO5622
    ... ... SCO5621 SCO5622
    919 20979333
    NC_003888.3 Q7AKQ8 dimer GCCACGCTGAGTGAC -[5108811:5108825] Experimental technique details ChIP-chip (ECO:0006007) - Experimental technique details DNA-array expression analysis (ECO:0005525) - Experimental technique details Motif-discovery (ECO:0005558) SCO4677 , SCO4676 , SCO4675 , SCO4678 , SCO4679
    ... ... SCO4677 SCO4676 SCO4675 SCO4678 SCO4679
    919 20979333
    NC_003888.3 Q7AKQ8 dimer TTTACTATGAGTGAC -[5705630:5705644] Experimental technique details ChIP-chip (ECO:0006007) - Experimental technique details DNA-array expression analysis (ECO:0005525) - Experimental technique details Motif-discovery (ECO:0005558) SCO5244 , SCO5243
    ... ... SCO5244 SCO5243
    919 20979333
    NC_003888.3 Q7AKQ8 dimer TGCACGAAGCGTTAT +[3675073:3675087] Experimental technique details ChIP-chip (ECO:0006007) - Experimental technique details DNA-array expression analysis (ECO:0005525) - Experimental technique details Motif-discovery (ECO:0005558) SCO3323
    ... ... SCO3323
    919 20979333
    NC_003888.3 Q7AKQ8 dimer CGTACTGCACGTGAT +[3675141:3675155] Experimental technique details ChIP-chip (ECO:0006007) - Experimental technique details DNA-array expression analysis (ECO:0005525) - Experimental technique details Motif-discovery (ECO:0005558) SCO3323
    ... ... SCO3323
    919 20979333
    NC_003888.3 Q7AKQ8 dimer GTAACGCTGCGTAAC +[1592294:1592308] Experimental technique details ChIP-chip (ECO:0006007) - Experimental technique details DNA-array expression analysis (ECO:0005525) - Experimental technique details Motif-discovery (ECO:0005558) SCO1488 , pyrB (SCO1487) , pyrC (SCO1486) , SCO1485 , SCO1484 , carB (SCO1483) , SCO1482 , pyrF (SCO1481) , SCO1489
    ... ... SCO1488 pyrB pyrC SCO1485 SCO1484 carB SCO1482 pyrF SCO1489
    919 20979333
    NC_003888.3 Q7AKQ8 dimer CTCACAGTGAGTTAC +[1592309:1592323] Experimental technique details ChIP-chip (ECO:0006007) - Experimental technique details DNA-array expression analysis (ECO:0005525) - Experimental technique details Motif-discovery (ECO:0005558) SCO1488 , pyrB (SCO1487) , pyrC (SCO1486) , SCO1485 , SCO1484 , carB (SCO1483) , SCO1482 , pyrF (SCO1481) , SCO1489
    ... ... SCO1488 pyrB pyrC SCO1485 SCO1484 carB SCO1482 pyrF SCO1489
    919 20979333
    NC_003888.3 Q7AKQ8 dimer GTGACTGATCGTCAC +[4485106:4485120] Experimental technique details ChIP-chip (ECO:0006007) - Experimental technique details DNA-array expression analysis (ECO:0005525) - Experimental technique details Motif-discovery (ECO:0005558) SCO4091
    ... ... SCO4091
    919 20979333
    NC_003888.3 Q7AKQ8 dimer GCCACGCGAAGTCGC +[6284993:6285007] Experimental technique details ChIP-chip (ECO:0006007) - Experimental technique details DNA-array expression analysis (ECO:0005525) - Experimental technique details Motif-discovery (ECO:0005558) SCO5749
    ... ... SCO5749
    919 20979333
    NC_003888.3 Q7AKQ8 dimer TGAACTCGCGGTGGC -[6083969:6083983] Experimental technique details ChIP-chip (ECO:0006007) - Experimental technique details DNA-array expression analysis (ECO:0005525) - Experimental technique details Motif-discovery (ECO:0005558) SCO5581 , SCO5582
    ... ... SCO5581 SCO5582
    919 20979333
    NC_003888.3 Q7AKQ8 dimer ATGACTCACCGTGAC +[1744949:1744963] Experimental technique details ChIP-chip (ECO:0006007) - Experimental technique details DNA-array expression analysis (ECO:0005525) - Experimental technique details Motif-discovery (ECO:0005558) SCO1630 , SCO1629 , SCO1628 , SCO1627 , SCO1626
    ... ... SCO1630 SCO1629 SCO1628 SCO1627 SCO1626
    919 20979333
    NC_003888.3 Q7AKQ8 dimer GTAACTCTCCGCGAC +[3910148:3910162] Experimental technique details ChIP-chip (ECO:0006007) - Experimental technique details DNA-array expression analysis (ECO:0005525) - Experimental technique details Motif-discovery (ECO:0005558) SCO3540 , SCOt28
    ... ... SCO3540 SCOt28
    919 20979333
    NC_003888.3 Q7AKQ8 dimer ACGACGCTGCGTGGG -[7488421:7488435] Experimental technique details ChIP-chip (ECO:0006007) - Experimental technique details DNA-array expression analysis (ECO:0005525) - Experimental technique details DNAse footprinting (ECO:0005631) - Experimental technique details Motif-discovery (ECO:0005558) SCO6733 , SCO6734 , SCO6735
    ... ... SCO6733 SCO6734 SCO6735
    919 20979333
    NC_003888.3 Q7AKQ8 dimer AATACGCAAGGTTAC -[806725:806739] Experimental technique details ChIP-chip (ECO:0006007) - Experimental technique details DNA-array expression analysis (ECO:0005525) - Experimental technique details Motif-discovery (ECO:0005558) SCO0762 , SCO0763
    ... ... SCO0762 SCO0763
    919 20979333
    NC_003888.3 Q7AKQ8 dimer GTCACGCTGCGTGAC -[3380869:3380883] Experimental technique details ChIP-chip (ECO:0006007) - Experimental technique details DNA-array expression analysis (ECO:0005525) - Experimental technique details DNAse footprinting (ECO:0005631) - Experimental technique details EMSA (ECO:0001807) - Experimental technique details Motif-discovery (ECO:0005558) SCO3087
    ... ... SCO3087
    919 20979333
    NC_003888.3 Q7AKQ8 dimer GCAACGCTTCGTGAT +[3046925:3046939] Experimental technique details ChIP-chip (ECO:0006007) - Experimental technique details DNA-array expression analysis (ECO:0005525) - Experimental technique details Motif-discovery (ECO:0005558) SCO2791 , SCO2792
    ... ... SCO2791 SCO2792
    919 20979333
    NC_003888.3 Q7AKQ8 not specified AGTGATCACC +[6120826:6120835] Experimental technique details DNAse footprinting (ECO:0005631) - Experimental technique details EMSA (ECO:0001807) - Experimental technique details Northern blot (ECO:0005653) - Experimental technique details S1 nuclease protection (ECO:0005666) SCO5621 , SCO5622
    ... ... SCO5621 SCO5622
    920 11298292
    NC_003888.3 Q7AKQ8 not specified AGTCACGCTACGCTCACG +[6120925:6120942] Experimental technique details DNAse footprinting (ECO:0005631) - Experimental technique details EMSA (ECO:0001807) - Experimental technique details Northern blot (ECO:0005653) - Experimental technique details S1 nuclease protection (ECO:0005666) SCO5621 , SCO5622
    ... ... SCO5621 SCO5622
    920 11298292
    NC_003888.3 Q7AKQ8 not specified AGCGACGAAGAGTCACC -[3680315:3680331] Experimental technique details DNAse footprinting (ECO:0005631) - Experimental technique details EMSA (ECO:0001807) - Experimental technique details Northern blot (ECO:0005653) - Experimental technique details S1 nuclease protection (ECO:0005666) SCO3328 , SCO3327
    ... ... SCO3328 SCO3327
    920 11298292
    NC_003888.3 Q7AKQ8 not specified AGTGCCTGCACGAAGCGTTATTCTCC +[3675067:3675092] Experimental technique details DNAse footprinting (ECO:0005631) - Experimental technique details EMSA (ECO:0001807) - Experimental technique details Northern blot (ECO:0005653) - Experimental technique details S1 nuclease protection (ECO:0005666) SCO3323
    ... ... SCO3323
    920 11298292

    All binding sites in split view are combined and a sequence logo is generated. Note that it may contain binding site sequences from different transcription factors and different species. To see individiual sequence logos and curation details go to split view.


    Sites are listed as curated.

    GGCACTCTACGTGAG
    TTCACTCTGCGGAAC
    AGTACTCATGGTGAC
    CTCACTCCTTGTGAT
    AACACTCAGAGGGGT
    TTCACCCTATGTGAT
    CTTACGGGGTGTGAC
    ATCACCCAGAGCGAT
    GTCACGCTACGCTCA
    GCCACGCTGAGTGAC
    TTTACTATGAGTGAC
    TGCACGAAGCGTTAT
    CGTACTGCACGTGAT
    GTAACGCTGCGTAAC
    CTCACAGTGAGTTAC
    GTGACTGATCGTCAC
    GCCACGCGAAGTCGC
    TGAACTCGCGGTGGC
    ATGACTCACCGTGAC
    GTAACTCTCCGCGAC
    ACGACGCTGCGTGGG
    AATACGCAAGGTTAC
    GTCACGCTGCGTGAC
    GCAACGCTTCGTGAT
    AGTGATCACC
    AGTCACGCTACGCTCACG
    AGCGACGAAGAGTCACC
    AGTGCCTGCACGAAGCGTTATTCTCC

    Sites are listed after the alignment process. For alignment of variable-length binding sites, LASAGNA is used.

    GGCACTCTACGTGAG
    TTCACTCTGCGGAAC
    AGTACTCATGGTGAC
    CTCACTCCTTGTGAT
    AACACTCAGAGGGGT
    ATCACATAGGGTGAA
    GTCACACCCCGTAAG
    ATCGCTCTGGGTGAT
    GTCACGCTACGCTCA
    GTCACTCAGCGTGGC
    GTCACTCATAGTAAA
    ATAACGCTTCGTGCA
    CGTACTGCACGTGAT
    GTAACGCTGCGTAAC
    GTAACTCACTGTGAG
    GTGACTGATCGTCAC
    GCGACTTCGCGTGGC
    TGAACTCGCGGTGGC
    ATGACTCACCGTGAC
    GTAACTCTCCGCGAC
    ACGACGCTGCGTGGG
    AATACGCAAGGTTAC
    GTCACGCTGCGTGAC
    GCAACGCTTCGTGAT
    Download data in FASTA format.
    Download data in TSV (tab-separated-value) format. For each binding site, all sources of evidence (i.e. experimental techniques and publication information) are combined into one record.
    Download raw data in TSV format. All reported sites are exported individually.
    Download data in Attribute-Relation File Format (ARFF).
    Download Position-Specific-Frequency-Matrix of the motif in TRANSFAC format.
    Download Position-Specific-Frequency-Matrix of the motif in JASPAR format.
    Download Position-Specific-Frequency-Matrix of the motif in raw FASTA format. The matrix consists of four columns in the order A C G T.