Transcription Factor Binding Site Information

dbxref
CollecTF:EXPSITE_0002c930
Genome
Shewanella oneidensis - NC_004347.2
TF
ArcA [UniProtKB:Q8EAB9, view regulon]

Supporting Evidence

Binding site Location Publication Experimental techniques used Curation
GTTAATTAATTGTTG - [3727322, 3727336] 18221523 Experimental technique details Consensus search (ECO:0005624) - Experimental technique details DNA-array expression analysis (ECO:0005525) - Experimental technique details EMSA (ECO:0001807) - Experimental technique details Multiple sequence alignment (MSA) (ECO:0005556) - 1015

Regulated genes

Regulated genes for each binding site are displayed below. Gene regulation diagrams show binding sites, positively-regulated genes, negatively-regulated genes, both positively and negatively regulated genes, genes with unspecified type of regulation. For each indvidual site, experimental techniques used to determine the site are also given.

... ... cpdB dcp
Gene Locus tag Description
cpdB SO_3565 bifunctional 2',3'-cyclic-nucleotide 2'-phosphodiesterase/3`-nucleotidase CpdB
dcp SO_3564 dipeptidyl carboxypeptidase Dcp