Site information for: CcpA in species Streptococcus lutetiensis; genome accession: NC

Transcription Factor Binding Site Information

dbxref: CollecTF:EXPSITE_00024f90
Genome: Streptococcus lutetiensis - NC_021900.1
TF: CcpA [UniProtKB:S5RJF3, view regulon]

Supporting Evidence

Binding site	Location	Publication	Experimental techniques used	Curation
TGAAAGCGATTTATC	+ [776750, 776764]	18565772	Experimental technique details qRT-PCR [RNA] (ECO:0001808) qRT-PCR [RNA] - ECO:0001808 Quantitative Reverse-Transcription PCR is a modification of PCR in which RNA is first reverse transcribed into cDNA and this is amplified measuring the product (qPCR) in real time. It therefore allows one to analyze transcription by directly measuring the product (RNA) of a gene's transcription. If the gene is transcribed more, the starting product for PCR is larger and the corresponding volume of amplification is also larger. - Experimental technique details Visual sequence inspection (nan) Visual sequence inspection - nan Visual inspection of promoter region to identify putative binding sites based on previous knowledge -	875

Regulated genes

Regulated genes for each binding site are displayed below. Gene regulation diagrams show binding sites, positively-regulated genes, negatively-regulated genes, both positively and negatively regulated genes, genes with unspecified type of regulation. For each indvidual site, experimental techniques used to determine the site are also given.

Gene	Locus tag	Description
KE3_0819	KE3_0819	6-phosphofructokinase
KE3_0820	KE3_0820	pyruvate kinase
KE3_0818	KE3_0818	DNA polymerase III DnaE
KE3_0817	KE3_0817	transcriptional regulator, GntR family
KE3_0816	KE3_0816	ABC-2 type transport system ATP-binding protein
KE3_0815	KE3_0815	ABC transporter permease protein