Transcription Factor Binding Site Information

dbxref
CollecTF:EXPSITE_00023be0
Genome
Bacillus subtilis - NC_000964.3
TF
CcpA [UniProtKB:P25144, view regulon]

Supporting Evidence

Binding site Location Publication Experimental techniques used Curation
GAAGGAACGATGACAA - [3645438, 3645453] 23123903 Experimental technique details Beta-gal reporter assay - Experimental technique details DNAse footprinting (ECO:0005631) - Experimental technique details EMSA (ECO:0001807) - Experimental technique details Site directed mutagenesis (ECO:0005667) - Experimental technique details Visual sequence inspection (nan) - Experimental technique details Western blot (quantitative) expression analysis (ECO:0000279) - 853

Regulated genes

Regulated genes for each binding site are displayed below. Gene regulation diagrams show binding sites, positively-regulated genes, negatively-regulated genes, both positively and negatively regulated genes, genes with unspecified type of regulation. For each indvidual site, experimental techniques used to determine the site are also given.

... ... degU degS yviA comFA comFB comFC yvyF flgM yvyG flgK flgL yviE yviF csrA hag yvyE yvhJ
Gene Locus tag Description
degU BSU35490 two-component response regulator
degS BSU35500 two-component sensor histidine kinase
yviA BSU35480 hypothetical protein
comFA BSU35470 helicase competence protein
comFB BSU35460 hypothetical protein
comFC BSU35450 DNA transport apparatus protein
yvyF BSU35440 regulator of flagella formation
flgM BSU35430 anti-sigma factor repressor of sigma(D)-dependent transcription
yvyG BSU35420 flagellar protein
flgK BSU35410 flagellar hook-associated protein FlgK
flgL BSU35400 flagellar hook-associated protein FlgL
yviE BSU35390 hypothetical protein
yviF BSU35380 flagellar assembly protein FliW
csrA BSU35370 carbon storage regulator
hag BSU35360 flagellin
yvyE BSU35510 hypothetical protein
yvhJ BSU35520 membrane bound transcriptional regulator