Transcription Factor Binding Site Information

dbxref
CollecTF:EXPSITE_000220c0
Genome
Pseudomonas putida - NC_002947.3
TF
IHF [UniProtKB:P0A126, view regulon], [UniProtKB:P0A128, view regulon]

Supporting Evidence

Binding site Location Publication Experimental techniques used Curation
TACAGAGTTTTA + [9238, 9249] 22510163 Experimental technique details Consensus search (ECO:0005624) - Experimental technique details DNA-array expression analysis (ECO:0005525) - 790

Regulated genes

Regulated genes for each binding site are displayed below. Gene regulation diagrams show binding sites, positively-regulated genes, negatively-regulated genes, both positively and negatively regulated genes, genes with unspecified type of regulation. For each indvidual site, experimental techniques used to determine the site are also given.

... ... rpmH rnpA PP_0007 yidC trmE dnaA dnaN recF gyrB
Gene Locus tag Description
rpmH PP_0009 50S ribosomal protein L34
rnpA PP_0008 ribonuclease P
PP_0007 PP_0007 hypothetical protein
yidC PP_0006 inner membrane protein translocase component YidC
trmE PP_0005 tRNA modification GTPase TrmE
dnaA PP_0010 chromosome replication initiator DnaA
dnaN PP_0011 DNA polymerase III subunit beta
recF PP_0012 recombination protein F
gyrB PP_0013 DNA gyrase subunit B