Transcription Factor Binding Site Information

dbxref
CollecTF:EXPSITE_00021ec0
Genome
Pseudomonas protegens - NC_004129.6
TF
Zur [UniProtKB:Q4KKK3, view regulon]

Supporting Evidence

Binding site Location Publication Experimental techniques used Curation
ATGTTATATTATAACAA - [7014701, 7014717] 22900619 Experimental technique details DNA-array expression analysis (ECO:0005525) - Experimental technique details Motif-discovery (ECO:0005558) - Experimental technique details qRT-PCR [RNA] (ECO:0001808) - 776

Regulated genes

Regulated genes for each binding site are displayed below. Gene regulation diagrams show binding sites, positively-regulated genes, negatively-regulated genes, both positively and negatively regulated genes, genes with unspecified type of regulation. For each indvidual site, experimental techniques used to determine the site are also given.

... ... amiC PFL_6177 mntA mntB mntC hisI2 PFL_6182 PFL_6183 thrS_2
Gene Locus tag Description
amiC PFL_6176 N-acetylmuramoyl-L-alanine amidase
PFL_6177 PFL_6177 GTP cyclohydrolase
mntA PFL_6178 manganese(II)/zinc(II) ABC transporter ATP-binding protein
mntB PFL_6179 manganese(II)/zinc(II) ABC transporter permease
mntC PFL_6180 manganese(II)/zinc(II) ABC transporter periplasmic manganese(II)/zinc(II)-binding protein
hisI2 PFL_6181 phosphoribosyl-AMP cyclohydrolase 2
PFL_6182 PFL_6182 carbonate dehydratase
PFL_6183 PFL_6183 dihydroorotase
thrS_2 PFL_6184 threonyl-tRNA synthetase