Transcription Factor Binding Site Information

dbxref
CollecTF:EXPSITE_00008b50
Genome
Pseudomonas putida - NC_002947.3
TF
IHF [UniProtKB:P0A126, view regulon]

Supporting Evidence

Binding site Location Publication Experimental techniques used Curation
TGTAAAATTATCG + [5101744, 5101756] 17217960 Experimental technique details Beta-gal reporter assay - Experimental technique details DNAse footprinting (ECO:0005631) - Experimental technique details EMSA (ECO:0001807) - Experimental technique details PSSM site search (ECO:0005659) - Experimental technique details Site directed mutagenesis (ECO:0005667) - Experimental technique details Visual sequence inspection (nan) - 426

Regulated genes

Regulated genes for each binding site are displayed below. Gene regulation diagrams show binding sites, positively-regulated genes, negatively-regulated genes, both positively and negatively regulated genes, genes with unspecified type of regulation. For each indvidual site, experimental techniques used to determine the site are also given.

... ... phhA phhR phhB
Gene Locus tag Description
phhA PP_4490 phenylalanine 4-monooxygenase
phhR PP_4489 transcriptional regulator TyrR
phhB PP_4491 pterin-4-alpha-carbinolamine dehydratase