Site information for: LasR in species Pseudomonas aeruginosa; genome accession: NC

Transcription Factor Binding Site Information

dbxref: CollecTF:EXPSITE_00008ad0
Genome: Pseudomonas aeruginosa - NC_002516.2
TF: LasR [UniProtKB:P25084, view regulon]

Supporting Evidence

Binding site	Location	Publication	Experimental techniques used	Curation
CCATCTGACATGTAGG	+ [27577, 27592]	19682264	Experimental technique details ChIP-PCR (ECO:0005620) ChIP-PCR - ECO:0005620 ChIP-chip (and to a lesser degree ChIP-Seq) results are often validated with ChIP-PCR, in which a PCR with specific primers is performed on the pulled-down DNA. As in the case of RNASeq, there are many variations of these main techniques. -	423

Regulated genes

Regulated genes for each binding site are displayed below. Gene regulation diagrams show binding sites, positively-regulated genes, negatively-regulated genes, both positively and negatively regulated genes, genes with unspecified type of regulation. For each indvidual site, experimental techniques used to determine the site are also given.

Gene	Locus tag	Description
plcB	PA0026	phospholipase C, PlcB
PA0027	PA0027	hypothetical protein
PA0028	PA0028	hypothetical protein
aroE	PA0025	shikimate 5-dehydrogenase
hemF	PA0024	coproporphyrinogen III oxidase
PA0029	PA0029	sulfate transporter
PA0030	PA0030	hypothetical protein
betC	PA0031	choline sulfatase
PA0032	PA0032	transcriptional regulator