Transcription Factor Binding Site Information

dbxref
CollecTF:EXPSITE_00008960
Genome
Pseudomonas aeruginosa - NC_002516.2
TF
LasR [UniProtKB:P25084, view regulon]

Supporting Evidence

Binding site Location Publication Experimental techniques used Curation
TAGCGAAAACATATCG + [1257515, 1257530] 19682264 Experimental technique details ChIP-chip (ECO:0006007) - Experimental technique details DNA-array expression analysis (ECO:0005525) - Experimental technique details EMSA (ECO:0001807) - Experimental technique details Motif-discovery (ECO:0005558) - 421

Regulated genes

Regulated genes for each binding site are displayed below. Gene regulation diagrams show binding sites, positively-regulated genes, negatively-regulated genes, both positively and negatively regulated genes, genes with unspecified type of regulation. For each indvidual site, experimental techniques used to determine the site are also given.

... ... PA1159 PA1158 PA1160 rrmA dapE ndvB
Gene Locus tag Description
PA1159 PA1159 cold-shock protein
PA1158 PA1158 two-component sensor
PA1160 PA1160 hypothetical protein
rrmA PA1161 rRNA methyltransferase
dapE PA1162 succinyl-diaminopimelate desuccinylase
ndvB PA1163 NdvB