Site information for: LexA in species Burkholderia thailandensis; genome accession: NC

Transcription Factor Binding Site Information

dbxref: CollecTF:EXPSITE_00008010
Genome: Burkholderia thailandensis - NC_007651.1
TF: LexA [UniProtKB:Q2SVP7, view regulon]

Supporting Evidence

Binding site	Location	Publication	Experimental techniques used	Curation
CTGTATTTTTATACAG	- [2839880, 2839895]	23872555	Experimental technique details Consensus search (ECO:0005624) Consensus search - ECO:0005624 This is a weak form of in-silico search, in which the consensus sequence for the motif is compared to genomic positions and the number of mismatches (between candidate site and consensus) is used as a measure of site-quality. - Experimental technique details RNA-Seq (ECO:0005664) RNA-Seq - ECO:0005664 In RNA-seq, RNA is extracted from the cell at a given time and reverse transcribed to obtain cDNA. This cDNA is then sequenced. This provides a snapshot of the "transcriptome" of an organism at a given time. -	403

Regulated genes

Regulated genes for each binding site are displayed below. Gene regulation diagrams show binding sites, positively-regulated genes, negatively-regulated genes, both positively and negatively regulated genes, genes with unspecified type of regulation. For each indvidual site, experimental techniques used to determine the site are also given.

Gene	Locus tag	Description
lexA	BTH_I2481	LexA repressor
BTH_I2480	BTH_I2480	sulfate ABC transporter periplasmic sulfate-binding protein
cysT	BTH_I2479	sulfate ABC transporter permease CysT
BTH_I2478	BTH_I2478	sulfate ABC transporter permease
BTH_I2477	BTH_I2477	sulfate ABC transporter ATP-binding protein
BTH_I2476	BTH_I2476	transcriptional regulator CysB-like protein
BTH_I2482	BTH_I2482	hypothetical protein