LexA
UniProtKB: Q9ZFA4 regulon and binding site collection of Rhodobacter sphaeroides 2.4.1
For the selected transcription factor and species, the list of curated binding sites in the database are displayed below. Gene regulation diagrams show [binding sites], [positively-regulated genes], [negatively-regulated genes], [both positively and negatively regulated genes], [genes with unspecified type of regulation].
| Genome | TF | TF conformation | Site Sequence | Site Location | Experimental Techniques | Gene Regulation | Curation | PMID |
|---|---|---|---|---|---|---|---|---|
| NC_012483.1 | Q9ZFA4 | DIMER | GCGAACAAAAACCGAACAG | + [284801, 284819] | EMSA (ECO:0001807) | lexA (ACP_0231), ACP_0232 (ACP_0232) | 92 | 16549674 |
| NC_009049.1 | Q9ZFA4 | DIMER | GTTCGCCTTATGATC | + [2230673, 2230687] | Beta-gal reporter assay, EMSA (ECO:0001807), DNAse footprinting (ECO:0005631), Primer Extension assay (ECO:0005657) | recA (Rsph17029_2105), Rsph17029_2106 (Rsph17029_2106), Rsph17029_2107 (Rsph17029_2107) | 151 | 11917014 |
| NC_009049.1 | Q9ZFA4 | DIMER | GAACATAGGGCGAAC | + [2230645, 2230659] | Beta-gal reporter assay, EMSA (ECO:0001807), DNAse footprinting (ECO:0005631), Primer Extension assay (ECO:0005657) | recA (Rsph17029_2105), Rsph17029_2106 (Rsph17029_2106), Rsph17029_2107 (Rsph17029_2107) | 151 | 11917014 |
| NC_007493.1 | Q9ZFA4 | DIMER | GAACGCGGGCAGAAC | + [596731, 596745] | Beta-gal reporter assay, Site directed mutagenesis (ECO:0005667), EMSA (ECO:0001807), Visual sequence inspection (nan) | lexA (RSP_1997), RSP_1998 (RSP_1998), moaC (RSP_2000), trpC (RSP_6214), trpD (RSP_2001), trpG (RSP_2002) | 159 | 10954081 |
| NC_007493.1 | Q9ZFA4 | DIMER | GAACAGGCGGTGAAC | + [596720, 596734] | Beta-gal reporter assay, Site directed mutagenesis (ECO:0005667), EMSA (ECO:0001807), Visual sequence inspection (nan) | lexA (RSP_1997), RSP_1998 (RSP_1998), moaC (RSP_2000), trpC (RSP_6214), trpD (RSP_2001), trpG (RSP_2002) | 159 | 10954081 |