LexA - UniProtKB: Q9ZFA4 regulon and binding site collection of Acidobacterium capsulatum ATCC 51196


Sites are listed as curated.

GCGAACAAAAACCGAACAG

Sites are listed after the alignment process. For alignment of variable-length binding sites, LASAGNA is used.

GCGAACAAAAACCGAACAG

For the selected transcription factor and species, the list of curated binding sites in the database are displayed below. Gene regulation diagrams show binding sites, positively-regulated genes, negatively-regulated genes, both positively and negatively regulated genes, genes with unspecified type of regulation.

    Genome TF TF conformation Site sequence Site location Experimental techniques Gene regulation Curations PMIDs
    NC_012483.1 Q9ZFA4 dimer GCGAACAAAAACCGAACAG +[284801:284819] Experimental technique details EMSA (ECO:0001807) lexA (ACP_0231) , ACP_0232
    ... ... lexA ACP_0232
    92 16549674

    LexA - UniProtKB: Q9ZFA4 regulon and binding site collection of Rhodobacter sphaeroides 2.4.1


    Sites are listed as curated.

    GAACGCGGGCAGAAC
    GAACAGGCGGTGAAC

    Sites are listed after the alignment process. For alignment of variable-length binding sites, LASAGNA is used.

    GAACGCGGGCAGAAC
    GAACAGGCGGTGAAC

    For the selected transcription factor and species, the list of curated binding sites in the database are displayed below. Gene regulation diagrams show binding sites, positively-regulated genes, negatively-regulated genes, both positively and negatively regulated genes, genes with unspecified type of regulation.

      Genome TF TF conformation Site sequence Site location Experimental techniques Gene regulation Curations PMIDs
      NC_007493.1 Q9ZFA4 dimer GAACGCGGGCAGAAC -[596731:596745] Experimental technique details Beta-gal reporter assay - Experimental technique details EMSA (ECO:0001807) - Experimental technique details Site directed mutagenesis (ECO:0005667) - Experimental technique details Visual sequence inspection (nan) lexA (RSP_1997) , RSP_1998 , moaC (RSP_2000) , trpC (RSP_6214) , trpD (RSP_2001) , trpG (RSP_2002)
      ... ... lexA RSP_1998 moaC trpC trpD trpG
      159 10954081
      NC_007493.1 Q9ZFA4 dimer GAACAGGCGGTGAAC -[596720:596734] Experimental technique details Beta-gal reporter assay - Experimental technique details EMSA (ECO:0001807) - Experimental technique details Site directed mutagenesis (ECO:0005667) - Experimental technique details Visual sequence inspection (nan) lexA (RSP_1997) , RSP_1998 , moaC (RSP_2000) , trpC (RSP_6214) , trpD (RSP_2001) , trpG (RSP_2002)
      ... ... lexA RSP_1998 moaC trpC trpD trpG
      159 10954081

      LexA - UniProtKB: Q9ZFA4 regulon and binding site collection of Rhodobacter sphaeroides ATCC 17029


      Sites are listed as curated.

      GTTCGCCTTATGATC
      GAACATAGGGCGAAC

      Sites are listed after the alignment process. For alignment of variable-length binding sites, LASAGNA is used.

      GTTCGCCTTATGATC
      GTTCGCCCTATGTTC

      For the selected transcription factor and species, the list of curated binding sites in the database are displayed below. Gene regulation diagrams show binding sites, positively-regulated genes, negatively-regulated genes, both positively and negatively regulated genes, genes with unspecified type of regulation.

        Genome TF TF conformation Site sequence Site location Experimental techniques Gene regulation Curations PMIDs
        NC_009049.1 Q9ZFA4 dimer GTTCGCCTTATGATC -[2230673:2230687] Experimental technique details Beta-gal reporter assay - Experimental technique details DNAse footprinting (ECO:0005631) - Experimental technique details EMSA (ECO:0001807) - Experimental technique details Primer Extension assay (ECO:0005657) recA (Rsph17029_2105) , Rsph17029_2106 , Rsph17029_2107
        ... ... recA Rsph17029_2106 Rsph17029_2107
        151 11917014
        NC_009049.1 Q9ZFA4 dimer GAACATAGGGCGAAC -[2230645:2230659] Experimental technique details Beta-gal reporter assay - Experimental technique details DNAse footprinting (ECO:0005631) - Experimental technique details EMSA (ECO:0001807) - Experimental technique details Primer Extension assay (ECO:0005657) recA (Rsph17029_2105) , Rsph17029_2106 , Rsph17029_2107
        ... ... recA Rsph17029_2106 Rsph17029_2107
        151 11917014

        All binding sites in split view are combined and a sequence logo is generated. Note that it may contain binding site sequences from different transcription factors and different species. To see individiual sequence logos and curation details go to split view.


        Sites are listed as curated.

        GCGAACAAAAACCGAACAG
        GTTCGCCTTATGATC
        GAACATAGGGCGAAC
        GAACGCGGGCAGAAC
        GAACAGGCGGTGAAC

        Sites are listed after the alignment process. For alignment of variable-length binding sites, LASAGNA is used.

        CTGTTCGGTTTTTGTTCGC
        ATGTTCGCCTTATGATCCC
        GAGTTCGCCCTATGTTCCG
        CTGTTCTGCCCGCGTTCCC
        TGGTTCACCGCCTGTTCTG
        Download data in FASTA format.
        Download data in TSV (tab-separated-value) format. For each binding site, all sources of evidence (i.e. experimental techniques and publication information) are combined into one record.
        Download raw data in TSV format. All reported sites are exported individually.
        Download data in Attribute-Relation File Format (ARFF).
        Download Position-Specific-Frequency-Matrix of the motif in TRANSFAC format.
        Download Position-Specific-Frequency-Matrix of the motif in JASPAR format.
        Download Position-Specific-Frequency-Matrix of the motif in raw FASTA format. The matrix consists of four columns in the order A C G T.