IscR - UniProtKB: Q9HXI7 regulon and binding site collection of Pseudomonas aeruginosa PAO1


Sites are listed as curated.

AAACCCGAGGTTTTCGCTCGGGTAAA
AATCCTGAGTAATTTGATCGGTCTT
ATAGTTGACCTAATTACTCGGATAA

Sites are listed after the alignment process. For alignment of variable-length binding sites, LASAGNA is used.

AAACCCGAGGTTTTCGCTCGGGTAAA
AATCCTGAGTAATTTGATCGGTCTTA
TTATCCGAGTAATTAGGTCAACTATA

For the selected transcription factor and species, the list of curated binding sites in the database are displayed below. Gene regulation diagrams show binding sites, positively-regulated genes, negatively-regulated genes, both positively and negatively regulated genes, genes with unspecified type of regulation.

    Genome TF TF conformation Site sequence Site location Experimental techniques Gene regulation Curations PMIDs
    NC_002516.2 Q9HXI7 not specified AAACCCGAGGTTTTCGCTCGGGTAAA -[2860360:2860385] Experimental technique details EMSA (ECO:0001807) - Experimental technique details Northern blot (ECO:0005653) - Experimental technique details Visual sequence inspection (nan) tpx (PA2532)
    ... ... tpx
    571 22609922
    NC_002516.2 Q9HXI7 not specified AATCCTGAGTAATTTGATCGGTCTT -[4272727:4272751] Experimental technique details qRT-PCR [RNA] (ECO:0001808) - Experimental technique details Visual sequence inspection (nan) iscR (PA3815) , iscS (PA3814) , iscU (PA3813) , iscA (PA3812) , hscB (PA3811) , hscA (PA3810) , fdx2 (PA3809) , PA3808
    ... ... iscR iscS iscU iscA hscB hscA fdx2 PA3808
    774 24466226
    NC_002516.2 Q9HXI7 not specified ATAGTTGACCTAATTACTCGGATAA -[4272702:4272726] Experimental technique details qRT-PCR [RNA] (ECO:0001808) - Experimental technique details Visual sequence inspection (nan) iscR (PA3815) , iscS (PA3814) , iscU (PA3813) , iscA (PA3812) , hscB (PA3811) , hscA (PA3810) , fdx2 (PA3809) , PA3808
    ... ... iscR iscS iscU iscA hscB hscA fdx2 PA3808
    774 24466226

    All binding sites in split view are combined and a sequence logo is generated. Note that it may contain binding site sequences from different transcription factors and different species. To see individiual sequence logos and curation details go to split view.


    Sites are listed as curated.

    AAACCCGAGGTTTTCGCTCGGGTAAA
    AATCCTGAGTAATTTGATCGGTCTT
    ATAGTTGACCTAATTACTCGGATAA

    Sites are listed after the alignment process. For alignment of variable-length binding sites, LASAGNA is used.

    AAACCCGAGGTTTTCGCTCGGGTAAA
    AATCCTGAGTAATTTGATCGGTCTTA
    TTATCCGAGTAATTAGGTCAACTATA
    Download data in FASTA format.
    Download data in TSV (tab-separated-value) format. For each binding site, all sources of evidence (i.e. experimental techniques and publication information) are combined into one record.
    Download raw data in TSV format. All reported sites are exported individually.
    Download data in Attribute-Relation File Format (ARFF).
    Download Position-Specific-Frequency-Matrix of the motif in TRANSFAC format.
    Download Position-Specific-Frequency-Matrix of the motif in JASPAR format.
    Download Position-Specific-Frequency-Matrix of the motif in raw FASTA format. The matrix consists of four columns in the order A C G T.