HrpX - UniProtKB: Q8PBF5 regulon and binding site collection of Xanthomonas campestris pv. campestris str. 8004


Sites are listed as curated.

TTCGCGCGTTTCGCAATTGCC

Sites are listed after the alignment process. For alignment of variable-length binding sites, LASAGNA is used.

TTCGCGCGTTTCGCAATTGCC

For the selected transcription factor and species, the list of curated binding sites in the database are displayed below. Gene regulation diagrams show binding sites, positively-regulated genes, negatively-regulated genes, both positively and negatively regulated genes, genes with unspecified type of regulation.

    Genome TF TF conformation Site sequence Site location Experimental techniques Gene regulation Curations PMIDs
    NC_007086.1 Q8PBF5 not specified TTCGCGCGTTTCGCAATTGCC +[1584204:1584224] Experimental technique details ChIP-PCR (ECO:0005620) - Experimental technique details EMSA (ECO:0001807) - Experimental technique details GUS reporter gene assay (ECO:0005641) XC_1296
    ... ... XC_1296
    639 22865058

    All binding sites in split view are combined and a sequence logo is generated. Note that it may contain binding site sequences from different transcription factors and different species. To see individiual sequence logos and curation details go to split view.


    Sites are listed as curated.

    TTCGCGCGTTTCGCAATTGCC

    Sites are listed after the alignment process. For alignment of variable-length binding sites, LASAGNA is used.

    TTCGCGCGTTTCGCAATTGCC
    Download data in FASTA format.
    Download data in TSV (tab-separated-value) format. For each binding site, all sources of evidence (i.e. experimental techniques and publication information) are combined into one record.
    Download raw data in TSV format. All reported sites are exported individually.
    Download data in Attribute-Relation File Format (ARFF).
    Download Position-Specific-Frequency-Matrix of the motif in TRANSFAC format.
    Download Position-Specific-Frequency-Matrix of the motif in JASPAR format.
    Download Position-Specific-Frequency-Matrix of the motif in raw FASTA format. The matrix consists of four columns in the order A C G T.