Lrp - UniProtKB: Q7MLV6 regulon and binding site collection of Vibrio vulnificus CMCP6


Sites are listed as curated.

CTGCTCATTTTCCAAT
TGAGATTAATCAACAC
GCTGTATATATAACTT

Sites are listed after the alignment process. For alignment of variable-length binding sites, LASAGNA is used.

CTGCTCATTTTCCAATCA
AATGAGATTAATCAACAC
ATGCTGTATATATAACTT

For the selected transcription factor and species, the list of curated binding sites in the database are displayed below. Gene regulation diagrams show binding sites, positively-regulated genes, negatively-regulated genes, both positively and negatively regulated genes, genes with unspecified type of regulation.

    Genome TF TF conformation Site sequence Site location Experimental techniques Gene regulation Curations PMIDs
    NC_004459.3 Q7MLV6 not specified CTGCTCATTTTCCAAT +[849575:849590] Experimental technique details Beta-gal reporter assay - Experimental technique details DNAse footprinting (ECO:0005631) - Experimental technique details EMSA (ECO:0001807) VV1_0842 , VV1_0841 , VV1_0840 , VV1_0839 , VV1_0838 , VV1_0837 , VV1_0836 , VV1_0843 , VV1_0844 , VV1_0845 , VV1_0846 , VV1_0847 , VV1_0848
    ... ... VV1_0842 VV1_0841 VV1_0840 VV1_0839 VV1_0838 VV1_0837 VV1_0836 VV1_0843 VV1_0844 VV1_0845 VV1_0846 VV1_0847 VV1_0848
    838 22307757
    NC_004459.3 Q7MLV6 not specified TGAGATTAATCAACAC +[849809:849824] Experimental technique details Beta-gal reporter assay - Experimental technique details DNAse footprinting (ECO:0005631) - Experimental technique details EMSA (ECO:0001807) VV1_0842 , VV1_0841 , VV1_0840 , VV1_0839 , VV1_0838 , VV1_0837 , VV1_0836 , VV1_0843 , VV1_0844 , VV1_0845 , VV1_0846 , VV1_0847 , VV1_0848
    ... ... VV1_0842 VV1_0841 VV1_0840 VV1_0839 VV1_0838 VV1_0837 VV1_0836 VV1_0843 VV1_0844 VV1_0845 VV1_0846 VV1_0847 VV1_0848
    838 22307757
    NC_004459.3 Q7MLV6 not specified GCTGTATATATAACTT +[849942:849957] Experimental technique details Beta-gal reporter assay - Experimental technique details DNAse footprinting (ECO:0005631) - Experimental technique details EMSA (ECO:0001807) VV1_0842 , VV1_0841 , VV1_0840 , VV1_0839 , VV1_0838 , VV1_0837 , VV1_0836 , VV1_0843 , VV1_0844 , VV1_0845 , VV1_0846 , VV1_0847 , VV1_0848
    ... ... VV1_0842 VV1_0841 VV1_0840 VV1_0839 VV1_0838 VV1_0837 VV1_0836 VV1_0843 VV1_0844 VV1_0845 VV1_0846 VV1_0847 VV1_0848
    838 22307757

    All binding sites in split view are combined and a sequence logo is generated. Note that it may contain binding site sequences from different transcription factors and different species. To see individiual sequence logos and curation details go to split view.


    Sites are listed as curated.

    CTGCTCATTTTCCAAT
    TGAGATTAATCAACAC
    GCTGTATATATAACTT

    Sites are listed after the alignment process. For alignment of variable-length binding sites, LASAGNA is used.

    CTGCTCATTTTCCAATCA
    AATGAGATTAATCAACAC
    ATGCTGTATATATAACTT
    Download data in FASTA format.
    Download data in TSV (tab-separated-value) format. For each binding site, all sources of evidence (i.e. experimental techniques and publication information) are combined into one record.
    Download raw data in TSV format. All reported sites are exported individually.
    Download data in Attribute-Relation File Format (ARFF).
    Download Position-Specific-Frequency-Matrix of the motif in TRANSFAC format.
    Download Position-Specific-Frequency-Matrix of the motif in JASPAR format.
    Download Position-Specific-Frequency-Matrix of the motif in raw FASTA format. The matrix consists of four columns in the order A C G T.