LexA - UniProtKB: Q6MHM9 regulon and binding site collection of Bdellovibrio bacteriovorus HD100


Sites are listed as curated.

ATTTACACTGTAAGT
ATTTACATAGTAATT

Sites are listed after the alignment process. For alignment of variable-length binding sites, LASAGNA is used.

ATTTACACTGTAAGT
ATTTACATAGTAATT

For the selected transcription factor and species, the list of curated binding sites in the database are displayed below. Gene regulation diagrams show binding sites, positively-regulated genes, negatively-regulated genes, both positively and negatively regulated genes, genes with unspecified type of regulation.

    Genome TF TF conformation Site sequence Site location Experimental techniques Gene regulation Curations PMIDs
    NC_005363.1 Q6MHM9 dimer ATTTACACTGTAAGT +[3418120:3418134] Experimental technique details DNAse footprinting (ECO:0005631) - Experimental technique details EMSA (ECO:0001807) - Experimental technique details qRT-PCR [RNA] (ECO:0001808) - Experimental technique details Site directed mutagenesis (ECO:0005667) lexA (Bd3511) , gspD (Bd3510) , Bd3509
    ... ... lexA gspD Bd3509
    472 16030231
    NC_005363.1 Q6MHM9 dimer ATTTACATAGTAATT -[363919:363933] Experimental technique details EMSA (ECO:0001807) - Experimental technique details qRT-PCR [RNA] (ECO:0001808) recA (Bd0386) , Bd0385 , dnaE (Bd0384) , Bd0383 , Bd0382 , Bd0387 , Bd0388 , ogt (Bd0389) , Bd0390 , Bd0391 , Bd0392 , Bd0393 , ace (Bd0394)
    ... ... recA Bd0385 dnaE Bd0383 Bd0382 Bd0387 Bd0388 ogt Bd0390 Bd0391 Bd0392 Bd0393 ace
    473 16030231

    All binding sites in split view are combined and a sequence logo is generated. Note that it may contain binding site sequences from different transcription factors and different species. To see individiual sequence logos and curation details go to split view.


    Sites are listed as curated.

    ATTTACACTGTAAGT
    ATTTACATAGTAATT

    Sites are listed after the alignment process. For alignment of variable-length binding sites, LASAGNA is used.

    ATTTACACTGTAAGT
    ATTTACATAGTAATT
    Download data in FASTA format.
    Download data in TSV (tab-separated-value) format. For each binding site, all sources of evidence (i.e. experimental techniques and publication information) are combined into one record.
    Download raw data in TSV format. All reported sites are exported individually.
    Download data in Attribute-Relation File Format (ARFF).
    Download Position-Specific-Frequency-Matrix of the motif in TRANSFAC format.
    Download Position-Specific-Frequency-Matrix of the motif in JASPAR format.
    Download Position-Specific-Frequency-Matrix of the motif in raw FASTA format. The matrix consists of four columns in the order A C G T.