ExsA - UniProtKB: P26993 regulon and binding site collection of Pseudomonas aeruginosa PAO1


Sites are listed as curated.

CTTAAAAGAAAAGTCTCTCAGTGACAA
CTAAAAATAACTGACGTTTTTTGAAAG
TAAAAAAACCACGGCCAATCCTGATAG
AAAGTCTCTCAGTGACAAA
CCGCCAACAGTAAAAAAA
ACGGCCAATCCTGATAG

Sites are listed after the alignment process. For alignment of variable-length binding sites, LASAGNA is used.

CTTAAAAGAAAAGTCTCTCAGTGACAAAA
CTTTCAAAAAACGTCAGTTATTTTTAGCC
TAAAAAAACCACGGCCAATCCTGATAGGC
CTTAAAAGAAAAGTCTCTCAGTGACAAAA
TGCTCCGACGGCCGCCAACAGTAAAAAAA
TAAAAAAACCACGGCCAATCCTGATAGGC

For the selected transcription factor and species, the list of curated binding sites in the database are displayed below. Gene regulation diagrams show binding sites, positively-regulated genes, negatively-regulated genes, both positively and negatively regulated genes, genes with unspecified type of regulation.

    Genome TF TF conformation Site sequence Site location Experimental techniques Gene regulation Curations PMIDs
    NC_002516.2 P26993 monomer CTTAAAAGAAAAGTCTCTCAGTGACAA +[1855782:1855808] Experimental technique details DNAse footprinting (ECO:0005631) - Experimental technique details EMSA (ECO:0001807) - Experimental technique details Multiple sequence alignment (MSA) (ECO:0005556) exsC (PA1710) , exsE (PA1711) , exsB (PA1712)
    ... ... exsC exsE exsB
    592 18373522
    NC_002516.2 P26993 monomer CTAAAAATAACTGACGTTTTTTGAAAG +[1858095:1858121] Experimental technique details DNAse footprinting (ECO:0005631) - Experimental technique details EMSA (ECO:0001807) - Experimental technique details Multiple sequence alignment (MSA) (ECO:0005556) exsA (PA1713) , exsD (PA1714) , pscB (PA1715) , pscC (PA1716) , pscD (PA1717) , pscE (PA1718) , pscF (PA1719) , pscG (PA1720) , pscH (PA1721) , pscI (PA1722) , pscJ (PA1723) , pscK (PA1724) , pscL (PA1725)
    ... ... exsA exsD pscB pscC pscD pscE pscF pscG pscH pscI pscJ pscK pscL
    592 18373522
    NC_002516.2 P26993 monomer TAAAAAAACCACGGCCAATCCTGATAG +[58701:58727] Experimental technique details DNAse footprinting (ECO:0005631) - Experimental technique details EMSA (ECO:0001807) - Experimental technique details Multiple sequence alignment (MSA) (ECO:0005556) PA0043 , exoT (PA0044)
    ... ... PA0043 exoT
    592 18373522
    NC_002516.2 P26993 monomer AAAGTCTCTCAGTGACAAA +[1855791:1855809] Experimental technique details Beta-gal reporter assay - Experimental technique details EMSA (ECO:0001807) - Experimental technique details Site directed mutagenesis (ECO:0005667) exsC (PA1710) , exsE (PA1711) , exsB (PA1712)
    ... ... exsC exsE exsB
    657 22408165
    NC_002516.2 P26993 monomer CCGCCAACAGTAAAAAAA +[58691:58708] Experimental technique details EMSA (ECO:0001807) - Experimental technique details Site directed mutagenesis (ECO:0005667) - Experimental technique details Visual sequence inspection (nan) PA0043 , exoT (PA0044)
    ... ... PA0043 exoT
    739 19376850
    NC_002516.2 P26993 monomer ACGGCCAATCCTGATAG +[58711:58727] Experimental technique details EMSA (ECO:0001807) - Experimental technique details Site directed mutagenesis (ECO:0005667) - Experimental technique details Visual sequence inspection (nan) PA0043 , exoT (PA0044)
    ... ... PA0043 exoT
    739 19376850

    All binding sites in split view are combined and a sequence logo is generated. Note that it may contain binding site sequences from different transcription factors and different species. To see individiual sequence logos and curation details go to split view.


    Sites are listed as curated.

    CTTAAAAGAAAAGTCTCTCAGTGACAA
    CTAAAAATAACTGACGTTTTTTGAAAG
    TAAAAAAACCACGGCCAATCCTGATAG
    AAAGTCTCTCAGTGACAAA
    CCGCCAACAGTAAAAAAA
    ACGGCCAATCCTGATAG

    Sites are listed after the alignment process. For alignment of variable-length binding sites, LASAGNA is used.

    CTTAAAAGAAAAGTCTCTCAGTGACAAAA
    CTTTCAAAAAACGTCAGTTATTTTTAGCC
    TAAAAAAACCACGGCCAATCCTGATAGGC
    CTTAAAAGAAAAGTCTCTCAGTGACAAAA
    TGCTCCGACGGCCGCCAACAGTAAAAAAA
    TAAAAAAACCACGGCCAATCCTGATAGGC
    Download data in FASTA format.
    Download data in TSV (tab-separated-value) format. For each binding site, all sources of evidence (i.e. experimental techniques and publication information) are combined into one record.
    Download raw data in TSV format. All reported sites are exported individually.
    Download data in Attribute-Relation File Format (ARFF).
    Download Position-Specific-Frequency-Matrix of the motif in TRANSFAC format.
    Download Position-Specific-Frequency-Matrix of the motif in JASPAR format.
    Download Position-Specific-Frequency-Matrix of the motif in raw FASTA format. The matrix consists of four columns in the order A C G T.