PhoP - UniProtKB: P0DM78 regulon and binding site collection of Salmonella enterica subsp. enterica serovar Typhimurium str. LT2


Sites are listed as curated.

TCGGGTTTATATGTTTTTAACAT
TCTGGTTTATCGTTGGTTTAATT
TCATGTTTAAACACGCTTTATTT
TTCTGTTTAAGTTTGTTTGATAT
TAATGTTTCCTTATATTTTAAAT
GTTTAGTGACGTTCTGTTTAAGT
AAATGTTTAGCTTGTATTTAATG
CCTCGTTTAACAATGGTTGAGGA
GGCGGTTGAGGGTTCGTTGAAAA
TATTATTTACGGTGTGTTTAAAC
CTGTGTTTAGAGAGAATTTACAT
CTGTGTTTAGAGAGAATTTACAT
CTCTGTTTATAGTTTGTTAAGAT
TCATGATTATAGATTGCTTATTA
TCTGGTTTATTAACTGTTTATCC
CTTTATTGAGGTTGTATTGATAA
CGCTATTGCCGTTTTGTTTATCC
TCTCGTTTAGAAAAGATTTATGG
CTTCGTTTAAGATTGGTTAATTA
AAATGTTTAAGCCCGGTTTAATA
CACGGTTGAGCAACTATTTACTT
CGCCATTGATAAACTGTTTAACA
CGATGTTGTTAAACAGTTTATCA
CTTCGTTGCCTTTACGTTTAACT
GTTTGTTTAGATACGGTTTACTT
TACGGTTTACTTTCTGGTTAAAA
CTGTATTGACGATTGGTTAATGT
CTACAGTTACTCCTGGTTTAAGT
TTTCGTTTAGGTTTTGTTTAAGT
AAATGCGTAAAACTTTCATAACC
ATCTGTTTATGGGCGGCGTCGGC
ACATATTTAAACCCTGTTAGGGT
AACCATTTATAAAATATTTAACT
TTATTTTAACCATCTGTTTAAGC
CTAATAATACTTTTAGTTTAACT
ATTTATTGAGGAGGCATTGAAGC
TGCCGTTACGATATGGTTTAAAT
TATTGTTTTTTGATGGTTTATTA
TCTGGTTTATCGTTGGTTTAATT
AAATGTTTAGCTTGTATTTAATG
TATTATTTACGGTGTGTTTAAAC
TCATGTTTAAACACGCTTTATTT

Sites are listed after the alignment process. For alignment of variable-length binding sites, LASAGNA is used.

CTCGGGTTTATATGTTTTTAACATTTG
TCTGGTTTATCGTTGGTTTAATTACGT
TCATGTTTAAACACGCTTTATTTCCTC
TTCTGTTTAAGTTTGTTTGATATTTTT
TAATGTTTCCTTATATTTTAAATTTAC
GTTTAGTGACGTTCTGTTTAAGTTTGT
AAATGTTTAGCTTGTATTTAATGGTTA
CCTCGTTTAACAATGGTTGAGGAAACA
GGCGGTTGAGGGTTCGTTGAAAAAAAA
TATTATTTACGGTGTGTTTAAACACCT
CTGTGTTTAGAGAGAATTTACATTCCA
CTGTGTTTAGAGAGAATTTACATTCCA
CTCTGTTTATAGTTTGTTAAGATTTTA
TCATGATTATAGATTGCTTATTATTCA
TCTGGTTTATTAACTGTTTATCCCCAA
CTTTATTGAGGTTGTATTGATAACCAC
CGCTATTGCCGTTTTGTTTATCCGTTG
TCTCGTTTAGAAAAGATTTATGGAAGG
CTTCGTTTAAGATTGGTTAATTAACTT
AAATGTTTAAGCCCGGTTTAATACCGG
CACGGTTGAGCAACTATTTACTTTCTC
CGCCATTGATAAACTGTTTAACAACAT
CGATGTTGTTAAACAGTTTATCAATGG
CTTCGTTGCCTTTACGTTTAACTCAAT
GTTTGTTTAGATACGGTTTACTTTCTG
TACGGTTTACTTTCTGGTTAAAATTTT
CTGTATTGACGATTGGTTAATGTTTCC
CTACAGTTACTCCTGGTTTAAGTAACT
TTTCGTTTAGGTTTTGTTTAAGTTCTT
AGAAGGTTATGAAAGTTTTACGCATTT
ATCTGTTTATGGGCGGCGTCGGCAACG
ACATATTTAAACCCTGTTAGGGTAAAA
AACCATTTATAAAATATTTAACTTAAA
TTATTTTAACCATCTGTTTAAGCGGTG
CTAATAATACTTTTAGTTTAACTTCTT
ATTTATTGAGGAGGCATTGAAGCAGGA
TGCCGTTACGATATGGTTTAAATTAAA
TATTGTTTTTTGATGGTTTATTATCGT
TCTGGTTTATCGTTGGTTTAATTACGT
AAATGTTTAGCTTGTATTTAATGGTTA
TATTATTTACGGTGTGTTTAAACACCT
TCATGTTTAAACACGCTTTATTTCCTC

For the selected transcription factor and species, the list of curated binding sites in the database are displayed below. Gene regulation diagrams show binding sites, positively-regulated genes, negatively-regulated genes, both positively and negatively regulated genes, genes with unspecified type of regulation.

    Genome TF TF conformation Site sequence Site location Experimental techniques Gene regulation Curations PMIDs
    NC_003197.1 P0DM78 dimer TCGGGTTTATATGTTTTTAACAT -[3019685:3019707] Experimental technique details ChIP-chip (ECO:0006007) - Experimental technique details DNA-array expression analysis (ECO:0005525) - Experimental technique details PSSM site search (ECO:0005659) hilA (STM2876) , hilD (STM2875) , iagB (STM2877)
    ... ... hilA hilD iagB
    13 20661307
    NC_003197.1 P0DM78 dimer TCTGGTTTATCGTTGGTTTAATT +[4699378:4699400] Experimental technique details ChIP-chip (ECO:0006007) - Experimental technique details DNA-array expression analysis (ECO:0005525) - Experimental technique details PSSM site search (ECO:0005659) mgtA (STM4456) , treR (STM4455)
    ... ... mgtA treR
    13 20661307
    NC_003197.1 P0DM78 dimer TCATGTTTAAACACGCTTTATTT -[3965269:3965291] Experimental technique details ChIP-chip (ECO:0006007) - Experimental technique details DNA-array expression analysis (ECO:0005525) - Experimental technique details PSSM site search (ECO:0005659) mgtC (STM3764) , yicL (STM3765) , STM3766
    ... ... mgtC yicL STM3766
    13 20661307
    NC_003197.1 P0DM78 dimer TTCTGTTTAAGTTTGTTTGATAT +[3965523:3965545] Experimental technique details ChIP-chip (ECO:0006007) - Experimental technique details DNA-array expression analysis (ECO:0005525) - Experimental technique details PSSM site search (ECO:0005659) mgtC (STM3764) , yicL (STM3765) , STM3766
    ... ... mgtC yicL STM3766
    13 20661307
    NC_003197.1 P0DM78 dimer TAATGTTTCCTTATATTTTAAAT -[3965144:3965166] Experimental technique details ChIP-chip (ECO:0006007) - Experimental technique details DNA-array expression analysis (ECO:0005525) - Experimental technique details PSSM site search (ECO:0005659) mgtC (STM3764) , mgtB (STM3763) , yicL (STM3765) , STM3766
    ... ... mgtC mgtB yicL STM3766
    13 20661307
    NC_003197.1 P0DM78 dimer GTTTAGTGACGTTCTGTTTAAGT +[3965512:3965534] Experimental technique details ChIP-chip (ECO:0006007) - Experimental technique details DNA-array expression analysis (ECO:0005525) - Experimental technique details PSSM site search (ECO:0005659) mgtC (STM3764) , yicL (STM3765) , STM3766
    ... ... mgtC yicL STM3766
    13 20661307
    NC_003197.1 P0DM78 dimer AAATGTTTAGCTTGTATTTAATG -[2929498:2929520] Experimental technique details ChIP-chip (ECO:0006007) - Experimental technique details DNA-array expression analysis (ECO:0005525) - Experimental technique details PSSM site search (ECO:0005659) virK (STM2781) , mig-14 (STM2782)
    ... ... virK mig-14
    13 20661307
    NC_003197.1 P0DM78 dimer CCTCGTTTAACAATGGTTGAGGA +[1655117:1655139] Experimental technique details ChIP-chip (ECO:0006007) - Experimental technique details DNA-array expression analysis (ECO:0005525) - Experimental technique details PSSM site search (ECO:0005659) nmpC (STM1572) , yddG (STM1571)
    ... ... nmpC yddG
    13 20661307
    NC_003197.1 P0DM78 dimer GGCGGTTGAGGGTTCGTTGAAAA +[899242:899264] Experimental technique details ChIP-chip (ECO:0006007) - Experimental technique details DNA-array expression analysis (ECO:0005525) - Experimental technique details PSSM site search (ECO:0005659) ybiF (STM0832) , ompX (STM0833)
    ... ... ybiF ompX
    13 20661307
    NC_003197.1 P0DM78 dimer TATTATTTACGGTGTGTTTAAAC -[1332207:1332229] Experimental technique details ChIP-chip (ECO:0006007) - Experimental technique details DNA-array expression analysis (ECO:0005525) - Experimental technique details PSSM site search (ECO:0005659) pagD (STM1244) , pagC (STM1246) , STM1245
    ... ... pagD pagC STM1245
    13 20661307
    NC_003197.1 P0DM78 dimer CTGTGTTTAGAGAGAATTTACAT -[1331612:1331634] Experimental technique details ChIP-chip (ECO:0006007) - Experimental technique details DNA-array expression analysis (ECO:0005525) - Experimental technique details PSSM site search (ECO:0005659) pagD (STM1244) , pagC (STM1246) , STM1245
    ... ... pagD pagC STM1245
    13 20661307
    NC_003197.1 P0DM78 dimer CTGTGTTTAGAGAGAATTTACAT -[1331612:1331634] Experimental technique details ChIP-chip (ECO:0006007) - Experimental technique details DNA-array expression analysis (ECO:0005525) - Experimental technique details PSSM site search (ECO:0005659) pagD (STM1244) , pagC (STM1246) , STM1245
    ... ... pagD pagC STM1245
    13 20661307
    NC_003197.1 P0DM78 dimer CTCTGTTTATAGTTTGTTAAGAT +[692083:692105] Experimental technique details ChIP-chip (ECO:0006007) - Experimental technique details DNA-array expression analysis (ECO:0005525) - Experimental technique details PSSM site search (ECO:0005659) pagP (STM0628) , dcuC (STM0627)
    ... ... pagP dcuC
    13 20661307
    NC_003197.1 P0DM78 dimer TCATGATTATAGATTGCTTATTA -[2507147:2507169] Experimental technique details ChIP-chip (ECO:0006007) - Experimental technique details DNA-array expression analysis (ECO:0005525) - Experimental technique details PSSM site search (ECO:0005659) pgtE (STM2395) , pgtA (STM2396) , pgtB (STM2397) , pgtC (STM2398)
    ... ... pgtE pgtA pgtB pgtC
    13 20661307
    NC_003197.1 P0DM78 dimer TCTGGTTTATTAACTGTTTATCC -[1319419:1319441] Experimental technique details ChIP-chip (ECO:0006007) - Experimental technique details DNA-array expression analysis (ECO:0005525) - Experimental technique details PSSM site search (ECO:0005659) phoP (STM1231) , phoQ (STM1230) , purB (STM1232) , ycfC (STM1233)
    ... ... phoP phoQ purB ycfC
    13 20661307
    NC_003197.1 P0DM78 dimer CTTTATTGAGGTTGTATTGATAA +[1182212:1182234] Experimental technique details ChIP-chip (ECO:0006007) - Experimental technique details DNA-array expression analysis (ECO:0005525) - Experimental technique details PSSM site search (ECO:0005659) pipD (STM1094) , copS (STM1095) , copR (STM1096)
    ... ... pipD copS copR
    13 20661307
    NC_003197.1 P0DM78 dimer CGCTATTGCCGTTTTGTTTATCC -[2411622:2411644] Experimental technique details ChIP-chip (ECO:0006007) - Experimental technique details DNA-array expression analysis (ECO:0005525) - Experimental technique details PSSM site search (ECO:0005659) pmrD (STM2304) , STM2303 , STM2302 , STM2300 , yfbG (STM2299) , pmrF (STM2298) , yfbE (STM2297) , arnT (STM2301) , menE (STM2305) , menC (STM2306) , menB (STM2307) , yfbB (STM2308) , menD (STM2309)
    ... ... pmrD STM2303 STM2302 STM2300 yfbG pmrF yfbE arnT menE menC menB yfbB menD
    13 20661307
    NC_003197.1 P0DM78 dimer TCTCGTTTAGAAAAGATTTATGG -[1552072:1552094] Experimental technique details ChIP-chip (ECO:0006007) - Experimental technique details DNA-array expression analysis (ECO:0005525) - Experimental technique details PSSM site search (ECO:0005659) rstA (STM1475) , ydgC (STM1476)
    ... ... rstA ydgC
    13 20661307
    NC_003197.1 P0DM78 dimer CTTCGTTTAAGATTGGTTAATTA -[1520956:1520978] Experimental technique details ChIP-chip (ECO:0006007) - Experimental technique details DNA-array expression analysis (ECO:0005525) - Experimental technique details PSSM site search (ECO:0005659) slyB (STM1445) , slyA (STM1444) , anmK (STM1446)
    ... ... slyB slyA anmK
    13 20661307
    NC_003197.1 P0DM78 dimer AAATGTTTAAGCCCGGTTTAATA -[2159328:2159350] Experimental technique details ChIP-chip (ECO:0006007) - Experimental technique details DNA-array expression analysis (ECO:0005525) - Experimental technique details PSSM site search (ECO:0005659) udg (STM2080) , gnd (STM2081)
    ... ... udg gnd
    13 20661307
    NC_003197.1 P0DM78 dimer CACGGTTGAGCAACTATTTACTT +[1691860:1691882] Experimental technique details ChIP-chip (ECO:0006007) - Experimental technique details DNA-array expression analysis (ECO:0005525) - Experimental technique details PSSM site search (ECO:0005659) ugtL (STM1601) , sifB (STM1602)
    ... ... ugtL sifB
    13 20661307
    NC_003197.1 P0DM78 dimer CGCCATTGATAAACTGTTTAACA +[2928255:2928277] Experimental technique details ChIP-chip (ECO:0006007) - Experimental technique details DNA-array expression analysis (ECO:0005525) - Experimental technique details PSSM site search (ECO:0005659) pipB2 (STM2780) , virK (STM2781)
    ... ... pipB2 virK
    13 20661307
    NC_003197.1 P0DM78 dimer CGATGTTGTTAAACAGTTTATCA -[2928261:2928283] Experimental technique details ChIP-chip (ECO:0006007) - Experimental technique details DNA-array expression analysis (ECO:0005525) - Experimental technique details PSSM site search (ECO:0005659) pipB2 (STM2780) , virK (STM2781)
    ... ... pipB2 virK
    13 20661307
    NC_003197.1 P0DM78 dimer CTTCGTTGCCTTTACGTTTAACT +[2928298:2928320] Experimental technique details ChIP-chip (ECO:0006007) - Experimental technique details DNA-array expression analysis (ECO:0005525) - Experimental technique details PSSM site search (ECO:0005659) pipB2 (STM2780) , virK (STM2781)
    ... ... pipB2 virK
    13 20661307
    NC_003197.1 P0DM78 dimer GTTTGTTTAGATACGGTTTACTT +[1018557:1018579] Experimental technique details ChIP-chip (ECO:0006007) - Experimental technique details DNA-array expression analysis (ECO:0005525) - Experimental technique details PSSM site search (ECO:0005659) ybjX (STM0940) , ybjY (STM0941) , ybjD (STM0939) , ybjZ (STM0942)
    ... ... ybjX ybjY ybjD ybjZ
    13 20661307
    NC_003197.1 P0DM78 dimer TACGGTTTACTTTCTGGTTAAAA +[1018568:1018590] Experimental technique details ChIP-chip (ECO:0006007) - Experimental technique details DNA-array expression analysis (ECO:0005525) - Experimental technique details PSSM site search (ECO:0005659) ybjY (STM0941) , ybjX (STM0940) , ybjD (STM0939) , ybjZ (STM0942)
    ... ... ybjY ybjX ybjD ybjZ
    13 20661307
    NC_003197.1 P0DM78 dimer CTGTATTGACGATTGGTTAATGT -[1018510:1018532] Experimental technique details ChIP-chip (ECO:0006007) - Experimental technique details DNA-array expression analysis (ECO:0005525) - Experimental technique details PSSM site search (ECO:0005659) ybjY (STM0941) , ybjX (STM0940) , ybjD (STM0939) , ybjZ (STM0942)
    ... ... ybjY ybjX ybjD ybjZ
    13 20661307
    NC_003197.1 P0DM78 dimer CTACAGTTACTCCTGGTTTAAGT -[1937108:1937130] Experimental technique details ChIP-chip (ECO:0006007) - Experimental technique details DNA-array expression analysis (ECO:0005525) - Experimental technique details PSSM site search (ECO:0005659) yobG (STM1840) , STM1841
    ... ... yobG STM1841
    13 20661307
    NC_003197.1 P0DM78 dimer TTTCGTTTAGGTTTTGTTTAAGT +[3488108:3488130] Experimental technique details ChIP-chip (ECO:0006007) - Experimental technique details DNA-array expression analysis (ECO:0005525) - Experimental technique details PSSM site search (ECO:0005659) yrbL (STM3325) , ptsO (STM3324) , yhbJ (STM3323) , ptsN (STM3322)
    ... ... yrbL ptsO yhbJ ptsN
    13 20661307
    NC_003197.1 P0DM78 dimer AAATGCGTAAAACTTTCATAACC -[238550:238572] Experimental technique details ChIP-chip (ECO:0006007) - Experimental technique details DNA-array expression analysis (ECO:0005525) - Experimental technique details PSSM site search (ECO:0005659) hemL (STM0202) , yadQ (STM0203)
    ... ... hemL yadQ
    13 20661307
    NC_003197.1 P0DM78 dimer ATCTGTTTATGGGCGGCGTCGGC -[744514:744536] Experimental technique details ChIP-chip (ECO:0006007) - Experimental technique details DNA-array expression analysis (ECO:0005525) - Experimental technique details PSSM site search (ECO:0005659) nagB (STM0684) , nagA (STM0683) , nagC (STM0682) , nagD (STM0681) , nagE (STM0685)
    ... ... nagB nagA nagC nagD nagE
    13 20661307
    NC_003197.1 P0DM78 dimer ACATATTTAAACCCTGTTAGGGT +[4530750:4530772] Experimental technique details ChIP-chip (ECO:0006007) - Experimental technique details DNA-array expression analysis (ECO:0005525) - Experimental technique details PSSM site search (ECO:0005659) proP (STM4290) , phnA (STM4289)
    ... ... proP phnA
    13 20661307
    NC_003197.1 P0DM78 dimer AACCATTTATAAAATATTTAACT -[1963054:1963076] Experimental technique details ChIP-chip (ECO:0006007) - Experimental technique details DNA-array expression analysis (ECO:0005525) - Experimental technique details PSSM site search (ECO:0005659) pagK (STM1867) , STM1866
    ... ... pagK STM1866
    13 20661307
    NC_003197.1 P0DM78 dimer TTATTTTAACCATCTGTTTAAGC -[1690790:1690812] Experimental technique details ChIP-chip (ECO:0006007) - Experimental technique details DNA-array expression analysis (ECO:0005525) - Experimental technique details PSSM site search (ECO:0005659) pdgL (STM1599) , ugtL (STM1601)
    ... ... pdgL ugtL
    13 20661307
    NC_003197.1 P0DM78 dimer CTAATAATACTTTTAGTTTAACT +[1691818:1691840] Experimental technique details ChIP-chip (ECO:0006007) - Experimental technique details DNA-array expression analysis (ECO:0005525) - Experimental technique details PSSM site search (ECO:0005659) ugtL (STM1601) , sifB (STM1602)
    ... ... ugtL sifB
    13 20661307
    NC_003197.1 P0DM78 dimer ATTTATTGAGGAGGCATTGAAGC -[3014510:3014532] Experimental technique details ChIP-chip (ECO:0006007) - Experimental technique details DNA-array expression analysis (ECO:0005525) - Experimental technique details PSSM site search (ECO:0005659) orgA (STM2870) , orgC (STM2868) , prgH (STM2874) , orgB (STM2869) , prgK (STM2871) , prgJ (STM2872) , prgI (STM2873)
    ... ... orgA orgC prgH orgB prgK prgJ prgI
    13 20661307
    NC_003197.1 P0DM78 dimer TGCCGTTACGATATGGTTTAAAT +[436830:436852] Experimental technique details ChIP-chip (ECO:0006007) - Experimental technique details DNA-array expression analysis (ECO:0005525) - Experimental technique details PSSM site search (ECO:0005659) yaiB (STM0383) , STM0382
    ... ... yaiB STM0382
    13 20661307
    NC_003197.1 P0DM78 dimer TATTGTTTTTTGATGGTTTATTA +[436924:436946] Experimental technique details ChIP-chip (ECO:0006007) - Experimental technique details DNA-array expression analysis (ECO:0005525) - Experimental technique details PSSM site search (ECO:0005659) yaiB (STM0383) , STM0382
    ... ... yaiB STM0382
    13 20661307
    NC_003197.1 P0DM78 dimer TCTGGTTTATCGTTGGTTTAATT +[4699378:4699400] Experimental technique details ChIP-PCR (ECO:0005620) - Experimental technique details DNA-array expression analysis (ECO:0005525) - Experimental technique details Machine learning prediction (ECO:0005649) - Experimental technique details PSSM site search (ECO:0005659) mgtA (STM4456) , STM4463 , pyrL (STM4461) , pyrB (STM4460) , pyrI (STM4459) , yjgF (STM4458) , STM4457 , treB (STM4454) , treR (STM4455) , treC (STM4453) , STM4452.1N
    ... ... mgtA STM4463 pyrL pyrB pyrI yjgF STM4457 treB treR treC STM4452.1N
    398 15703297
    NC_003197.1 P0DM78 dimer AAATGTTTAGCTTGTATTTAATG -[2929498:2929520] Experimental technique details ChIP-PCR (ECO:0005620) - Experimental technique details DNA-array expression analysis (ECO:0005525) - Experimental technique details Machine learning prediction (ECO:0005649) - Experimental technique details PSSM site search (ECO:0005659) mig-14 (STM2782) , virK (STM2781)
    ... ... mig-14 virK
    398 15703297
    NC_003197.1 P0DM78 dimer TATTATTTACGGTGTGTTTAAAC -[1332207:1332229] Experimental technique details ChIP-PCR (ECO:0005620) - Experimental technique details DNA-array expression analysis (ECO:0005525) - Experimental technique details Machine learning prediction (ECO:0005649) - Experimental technique details PSSM site search (ECO:0005659) pagC (STM1246) , STM1243 , pagD (STM1244) , STM1245
    ... ... pagC STM1243 pagD STM1245
    398 15703297
    NC_003197.1 P0DM78 dimer TCATGTTTAAACACGCTTTATTT -[3965269:3965291] Experimental technique details ChIP-PCR (ECO:0005620) - Experimental technique details DNA-array expression analysis (ECO:0005525) - Experimental technique details Machine learning prediction (ECO:0005649) - Experimental technique details PSSM site search (ECO:0005659) mgtC (STM3764) , STM3766 , yicL (STM3765)
    ... ... mgtC STM3766 yicL
    398 15703297

    All binding sites in split view are combined and a sequence logo is generated. Note that it may contain binding site sequences from different transcription factors and different species. To see individiual sequence logos and curation details go to split view.


    Sites are listed as curated.

    TCGGGTTTATATGTTTTTAACAT
    TCTGGTTTATCGTTGGTTTAATT
    TCATGTTTAAACACGCTTTATTT
    TTCTGTTTAAGTTTGTTTGATAT
    TAATGTTTCCTTATATTTTAAAT
    GTTTAGTGACGTTCTGTTTAAGT
    AAATGTTTAGCTTGTATTTAATG
    CCTCGTTTAACAATGGTTGAGGA
    GGCGGTTGAGGGTTCGTTGAAAA
    TATTATTTACGGTGTGTTTAAAC
    CTGTGTTTAGAGAGAATTTACAT
    CTGTGTTTAGAGAGAATTTACAT
    CTCTGTTTATAGTTTGTTAAGAT
    TCATGATTATAGATTGCTTATTA
    TCTGGTTTATTAACTGTTTATCC
    CTTTATTGAGGTTGTATTGATAA
    CGCTATTGCCGTTTTGTTTATCC
    TCTCGTTTAGAAAAGATTTATGG
    CTTCGTTTAAGATTGGTTAATTA
    AAATGTTTAAGCCCGGTTTAATA
    CACGGTTGAGCAACTATTTACTT
    CGCCATTGATAAACTGTTTAACA
    CGATGTTGTTAAACAGTTTATCA
    CTTCGTTGCCTTTACGTTTAACT
    GTTTGTTTAGATACGGTTTACTT
    TACGGTTTACTTTCTGGTTAAAA
    CTGTATTGACGATTGGTTAATGT
    CTACAGTTACTCCTGGTTTAAGT
    TTTCGTTTAGGTTTTGTTTAAGT
    AAATGCGTAAAACTTTCATAACC
    ATCTGTTTATGGGCGGCGTCGGC
    ACATATTTAAACCCTGTTAGGGT
    AACCATTTATAAAATATTTAACT
    TTATTTTAACCATCTGTTTAAGC
    CTAATAATACTTTTAGTTTAACT
    ATTTATTGAGGAGGCATTGAAGC
    TGCCGTTACGATATGGTTTAAAT
    TATTGTTTTTTGATGGTTTATTA
    TCTGGTTTATCGTTGGTTTAATT
    AAATGTTTAGCTTGTATTTAATG
    TATTATTTACGGTGTGTTTAAAC
    TCATGTTTAAACACGCTTTATTT

    Sites are listed after the alignment process. For alignment of variable-length binding sites, LASAGNA is used.

    CTCGGGTTTATATGTTTTTAACATTTG
    TCTGGTTTATCGTTGGTTTAATTACGT
    TCATGTTTAAACACGCTTTATTTCCTC
    TTCTGTTTAAGTTTGTTTGATATTTTT
    TAATGTTTCCTTATATTTTAAATTTAC
    GTTTAGTGACGTTCTGTTTAAGTTTGT
    AAATGTTTAGCTTGTATTTAATGGTTA
    CCTCGTTTAACAATGGTTGAGGAAACA
    GGCGGTTGAGGGTTCGTTGAAAAAAAA
    TATTATTTACGGTGTGTTTAAACACCT
    CTGTGTTTAGAGAGAATTTACATTCCA
    CTGTGTTTAGAGAGAATTTACATTCCA
    CTCTGTTTATAGTTTGTTAAGATTTTA
    TCATGATTATAGATTGCTTATTATTCA
    TCTGGTTTATTAACTGTTTATCCCCAA
    CTTTATTGAGGTTGTATTGATAACCAC
    CGCTATTGCCGTTTTGTTTATCCGTTG
    TCTCGTTTAGAAAAGATTTATGGAAGG
    CTTCGTTTAAGATTGGTTAATTAACTT
    AAATGTTTAAGCCCGGTTTAATACCGG
    CACGGTTGAGCAACTATTTACTTTCTC
    CGCCATTGATAAACTGTTTAACAACAT
    CGATGTTGTTAAACAGTTTATCAATGG
    CTTCGTTGCCTTTACGTTTAACTCAAT
    GTTTGTTTAGATACGGTTTACTTTCTG
    TACGGTTTACTTTCTGGTTAAAATTTT
    CTGTATTGACGATTGGTTAATGTTTCC
    CTACAGTTACTCCTGGTTTAAGTAACT
    TTTCGTTTAGGTTTTGTTTAAGTTCTT
    AGAAGGTTATGAAAGTTTTACGCATTT
    ATCTGTTTATGGGCGGCGTCGGCAACG
    ACATATTTAAACCCTGTTAGGGTAAAA
    AACCATTTATAAAATATTTAACTTAAA
    TTATTTTAACCATCTGTTTAAGCGGTG
    CTAATAATACTTTTAGTTTAACTTCTT
    ATTTATTGAGGAGGCATTGAAGCAGGA
    TGCCGTTACGATATGGTTTAAATTAAA
    TATTGTTTTTTGATGGTTTATTATCGT
    TCTGGTTTATCGTTGGTTTAATTACGT
    AAATGTTTAGCTTGTATTTAATGGTTA
    TATTATTTACGGTGTGTTTAAACACCT
    TCATGTTTAAACACGCTTTATTTCCTC
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    Download raw data in TSV format. All reported sites are exported individually.
    Download data in Attribute-Relation File Format (ARFF).
    Download Position-Specific-Frequency-Matrix of the motif in TRANSFAC format.
    Download Position-Specific-Frequency-Matrix of the motif in JASPAR format.
    Download Position-Specific-Frequency-Matrix of the motif in raw FASTA format. The matrix consists of four columns in the order A C G T.