CRP - UniProtKB: A0KST7 regulon and binding site collection of Shewanella sp. ANA-3


Sites are listed as curated.

CTATTTGCTACTGATCACATTT

Sites are listed after the alignment process. For alignment of variable-length binding sites, LASAGNA is used.

CTATTTGCTACTGATCACATTT

For the selected transcription factor and species, the list of curated binding sites in the database are displayed below. Gene regulation diagrams show binding sites, positively-regulated genes, negatively-regulated genes, both positively and negatively regulated genes, genes with unspecified type of regulation.

    Genome TF TF conformation Site sequence Site location Experimental techniques Gene regulation Curations PMIDs
    NC_008577.1 A0KST7 not specified CTATTTGCTACTGATCACATTT -[2817929:2817950] Experimental technique details EMSA (ECO:0001807) - Experimental technique details PSSM site search (ECO:0005659) - Experimental technique details qRT-PCR [RNA] (ECO:0001808) Shewana3_2342 , Shewana3_2343 , Shewana3_2344 , Shewana3_2345 , Shewana3_2341 , Shewana3_2340
    ... ... Shewana3_2342 Shewana3_2343 Shewana3_2344 Shewana3_2345 Shewana3_2341 Shewana3_2340
    999 19060154

    All binding sites in split view are combined and a sequence logo is generated. Note that it may contain binding site sequences from different transcription factors and different species. To see individiual sequence logos and curation details go to split view.


    Sites are listed as curated.

    CTATTTGCTACTGATCACATTT

    Sites are listed after the alignment process. For alignment of variable-length binding sites, LASAGNA is used.

    CTATTTGCTACTGATCACATTT
    Download data in FASTA format.
    Download data in TSV (tab-separated-value) format. For each binding site, all sources of evidence (i.e. experimental techniques and publication information) are combined into one record.
    Download raw data in TSV format. All reported sites are exported individually.
    Download data in Attribute-Relation File Format (ARFF).
    Download Position-Specific-Frequency-Matrix of the motif in TRANSFAC format.
    Download Position-Specific-Frequency-Matrix of the motif in JASPAR format.
    Download Position-Specific-Frequency-Matrix of the motif in raw FASTA format. The matrix consists of four columns in the order A C G T.